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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G197880
Reference: TK1151 Chr: Chr03 Coordinates: 49662105-49664308 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

351 bp · TkA03G197880|TK1151|cDNA

AAAAAATGTCAATTTTATATGTTCGAGAAGTACAAAAATCAGGCGGCCTTTCCCTTCCCTTTCCAGCAGCTTATAAAAAGAGAGAATAAAAAGAAACGAACCCTTCTTGTCTTTCCTCACTTTTGCGCCACTTTTGCTTTCGTATACCGACCACCACTATACACTTATTACGTCTCTTGGCTGATACGAAATCCCTCTTTCAGAAACCCACCGACGATCTTCTCGATATGGCAACGACTGGTCCCAGCAATCTCAATGCA...

CDS

Download CDS FASTA

609 bp · TkA03G197880|TK1151|CDS

ATGGCAACGACTGGTCCCAGCAATCTCAATGCAAAATTGGTCTTGCTCGGAGACATGGGAGCCGGTAAATCCAGTCTCGTATTGCGGTTCGTCAAAGGCCAATTTCTGGAATTCCAGGAATCCACCATCGGCGCAGCCTTCTTTTCACAAACTTTAGCGGTAAACGACGCCACTGTGAAATTTGAGATTTGGGATACGGCGGGTCAAGAAAGGTATCATAGTTTGGCCCCTATGTACTACAGAGGAGCTGCTGCGGCCAT...

Protein

Download Protein FASTA

202 aa · TkA03G197880|TK1151|PROTEIN

MATTGPSNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNMDSFTRAKKWVQELQKQGNPNMVTALAGNKADLEEKRNVTTEEARVYAEENGLFFMETSAKAATNVNDIFHEIAKRLPRGQQPTQSSSGMVLVDRPTQGPRASATCCS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G197880
TK1151 IDTkA03G197880
OH-1004 IDLXL04_007623
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 85.232
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G197880
LocationChr03:49662105-49664308 (+)
DescriptionSimilar to RHN1: Ras-related protein RHN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g45130 Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole. No verified direct reference in this release
At4g19640 Endosomal protein that may be involved in endocytosis.
ARA7(Q69L) expression in transgenic Arabidopsis cells induces the formation of enlarged multivesicular bodies.2013 · DOI: 10.1093/jxb/ert125

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0631100 Plays an important role in intracellular trafficking of seed storage proteins to the protein storage vacuoles (PSVs).
OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells.2010 · DOI: 10.1111/j.1365-313x.2010.04370.x
The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm.2011 · DOI: 10.1104/pp.111.180505
OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cells.2013 · DOI: 10.1093/mp/sst081
Zipcode RNA-Binding Proteins and Membrane Trafficking Proteins Cooperate to Transport Glutelin mRNAs in Rice Endosperm.2020 · DOI: 10.1105/tpc.20.00111
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0007033 vacuole organization Biological Process
GO:0007034 vacuolar transport Biological Process
GO:0010256 endomembrane system organization Biological Process
GO:0015031 protein transport Biological Process
GO:0045324 late endosome to vacuole transport Biological Process
GO:0051028 mRNA transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005769 early endosome Cellular Component
GO:0005774 vacuolar membrane Cellular Component
KEGG gene cross-reference
ath:AT4G19640
ath:AT5G45130
dosa:Os12g0631100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.519
Rank 1 · TkA03G197880 · TK1151
Golgi apparatus0.408
Rank 2 · TkA03G197880 · TK1151
Cell membrane0.225
Rank 3 · TkA03G197880 · TK1151
Lysosome / Vacuole0.172
Rank 4 · TkA03G197880 · TK1151
Endoplasmic reticulum0.149
Rank 5 · TkA03G197880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf8-134 aa
PF13479AAA_2410-70 aa
PF02367TsaE11-33 aa
PF00071Ras12-171 aa
PF08477Roc12-126 aa
PF04670Gtr1_RagA12-130 aa
PF01926MMR_HSR113-117 aa
PF03193RsgA_GTPase13-34 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G197880PF00025Arf81342.9e-1247.1
TkA03G197880PF13479AAA_2410700.01316.0
TkA03G197880PF02367TsaE11330.1512.8
TkA03G197880PF00071Ras121711.4e-60204.3
TkA03G197880PF08477Roc121266.5e-34117.4
TkA03G197880PF04670Gtr1_RagA121300.001618.6
TkA03G197880PF01926MMR_HSR1131170.0006420.5
TkA03G197880PF03193RsgA_GTPase13340.001718.9
TkA03G197880PF13191AAA_1613500.09114.0
TkA03G197880PF06745ATPase14470.1112.6
TkA03G197880PF00009GTP_EFTU391720.0001821.9
TkA03G197880PF06745ATPase1061720.1112.6
TkA03G197880PF01926MMR_HSR11171430.0006420.5
TkA03G197880PF03193RsgA_GTPase1191700.001718.9
TkA03G197880PF29835SOV1_N1231660.2312.3
TkA03G197880PF02367TsaE1361580.1512.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P31582Arabidopsis thalianasp|P31582|RAF2A_ARATH Ras-related protein RABF2a77.200%Swiss-ProtHigh
Q9SN68Arabidopsis thalianasp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b76.200%Swiss-ProtHigh
Q0ILQ6Oryza sativa subsp. japonicasp|Q0ILQ6|RAB5A_ORYSJ Ras-related protein Rab5A76.600%Swiss-ProtHigh

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