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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G197880
Query referenceTK1151
LocationChr03:49662105-49664308 (+)
DescriptionSimilar to RHN1: Ras-related protein RHN1 (Nicotiana plumbaginifolia OX%3D4092)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_007623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 25 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g45130 Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole. No verified direct reference in this release
At4g19640 Endosomal protein that may be involved in endocytosis.
ARA7(Q69L) expression in transgenic Arabidopsis cells induces the formation of enlarged multivesicular bodies.2013 · DOI: 10.1093/jxb/ert125

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0631100 Plays an important role in intracellular trafficking of seed storage proteins to the protein storage vacuoles (PSVs).
OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells.2010 · DOI: 10.1111/j.1365-313x.2010.04370.x
The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm.2011 · DOI: 10.1104/pp.111.180505
OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cells.2013 · DOI: 10.1093/mp/sst081
Zipcode RNA-Binding Proteins and Membrane Trafficking Proteins Cooperate to Transport Glutelin mRNAs in Rice Endosperm.2020 · DOI: 10.1105/tpc.20.00111

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006886intracellular protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=82.673; coverage=85.232; evalue=7.48e-122; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007033vacuole organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007034vacuolar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.168; coverage=85.232; evalue=5.22e-123; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010256endomembrane system organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=76.617; coverage=84.81; evalue=2.39e-111; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.168; coverage=85.232; evalue=5.22e-123; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045324late endosome to vacuole transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051028mRNA transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=76.617; coverage=84.81; evalue=2.39e-111; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=76.617; coverage=84.81; evalue=2.39e-111; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.168; coverage=85.232; evalue=5.22e-123; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=82.673; coverage=85.232; evalue=7.48e-122; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005769early endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005774vacuolar membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=78.713; coverage=85.232; evalue=1.04e-113; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=78.713; coverage=85.232; evalue=1.04e-113; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.168; coverage=85.232; evalue=5.22e-123; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009705plant-type vacuole membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=76.617; coverage=84.81; evalue=2.39e-111; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=78.713; coverage=85.232; evalue=1.04e-113; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012505endomembrane systemCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=82.673; coverage=85.232; evalue=7.48e-122; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030139endocytic vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=82.673; coverage=85.232; evalue=7.48e-122; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031901early endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032585multivesicular body membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032586protein storage vacuole membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=76.617; coverage=84.81; evalue=2.39e-111; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003924GTPase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.168; coverage=85.232; evalue=5.22e-123; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005525GTP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.168; coverage=85.232; evalue=5.22e-123; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036094small molecule bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=EXP:DisProtUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140313molecular sequestering activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111; UniProt GO evidence=EXP:DisProtUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G19640KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.34; coverage=85.654; evalue=8.86e-111UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G45130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=78.713; coverage=85.232; evalue=1.04e-113UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os12g0631100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=76.617; coverage=84.81; evalue=2.39e-111UniProtKB/Swiss-Prot DAT 2026 current_release