TkA03G162050 | RubberDandelionOmics

Gene overview

TkA03G162050

Reference: TK1151 Chr: Chr03 Coordinates: 41092863-41097959 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1375 bp · TkA03G162050|TK1151|cDNA

CTTATATGCAGTTATCCGATTACTAGACCTGTCCCTATCCCTCCCCACCCTTGACCCTTCCCCAATCTTGACCTGTGTCATCGACTGCGTTTCGATTATCCTCAACACTGCTCTTATTCCCCGACTCCGAGCTGCTCTAAAACGCTGCTGAGTGTTTCTGTTATGCAATAATCACAAGCTCAGCTATAGCTGTTTGGGGGGATTTTTTATCAGGTCGTTCAGCTGAATGACGATGATGGGTTGTTGCGTTCCCTCTCGTG...

CDS

Download CDS FASTA

1149 bp · TkA03G162050|TK1151|CDS

ATGACGATGATGGGTTGTTGCGTTCCCTCTCGTGACACATCGGATCGTTTCTCCGACCGATGCTTCAATGTCTTCCCATGTCTATCCGATCCTGTTAGAAGATCGACGTTGTGTATGAAATTGGCTTTGGTGATGCTGCATATAGTATTCGTGGGGTTTCTTTTCATATTTGATGACGAATTAATACAGAAATCAAAACAACAACCTTGGTACACCTCCATGTATATGTTGCTGGTTGTTGTTACATTAGTTCAGTATTT...

Protein

Download Protein FASTA

382 aa · TkA03G162050|TK1151|PROTEIN

MTMMGCCVPSRDTSDRFSDRCFNVFPCLSDPVRRSTLCMKLALVMLHIVFVGFLFIFDDELIQKSKQQPWYTSMYMLLVVVTLVQYFFTSGSSPGYVVDAMREYARTEASLRASEISKQPASSKNGSVVVTIDNNQFGEHLLGNNPLNWTKIVMDMYPPGTSVRTYTCSYCNVVQPPRAKHCHDCDRCVLQFDHHCVWLGTCIGQGNHCRFWWYILGETALSIWTGILYIKYLQTHIEKAWLVDVIMIILLSVLAIALIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G162050`
TK1151 ID	TkA03G162050
OH-1004 ID	LXL04_013858
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	61.400
Protein coverage (%)	TK1151 80.105 / OH-1004 91.892 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G162050

Location Chr03:41092863-41097959 (+)

Description Similar to PAT10: Protein S-acyltransferase 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51390`	S-acyltransferase involved in protein lipid modification.	Protein S-ACYL Transferase10 is critical for development and salt tolerance in Arabidopsis.2013 · DOI: 10.1105/tpc.112.108829
`At3g56930`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g48760`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At4g24630`	S-acyltransferase involved in protein lipid modification.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013858 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0009651 response to salt stress Biological Process

GO:0018230 peptidyl-L-cysteine S-palmitoylation Biological Process

GO:0048767 root hair elongation Biological Process

GO:0099402 plant organ development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT3G26935

ath:AT3G51390

ath:AT3G56930

ath:AT4G24630

dre:100332332

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.278

Rank 1 · TkA03G162050 · TK1151

Endoplasmic reticulum0.262

Rank 2 · TkA03G162050 · TK1151

Cytoplasm0.243

Rank 3 · TkA03G162050 · TK1151

Lysosome / Vacuole0.225

Rank 4 · TkA03G162050 · TK1151

Cell membrane0.166

Rank 5 · TkA03G162050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05656DUF80533-84 aa

PF02673BacA34-83 aa

PF01529DHHC41-93 aa

PF01529DHHC165-283 aa

PF02673BacA206-256 aa

PF05656DUF805210-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G162050	`PF05656`	DUF805	33	84	9.1	7.5
TkA03G162050	`PF02673`	BacA	34	83	0.11	12.9
TkA03G162050	`PF01529`	DHHC	41	93	3.1e-33	115.4
TkA03G162050	`PF01529`	DHHC	165	283	3.1e-33	115.4
TkA03G162050	`PF02673`	BacA	206	256	0.11	12.9
TkA03G162050	`PF05656`	DUF805	210	258	9.1	7.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7XA86`	Arabidopsis thaliana	sp\|Q7XA86\|ZDH11_ARATH Protein S-acyltransferase 10	56.900%	Swiss-Prot	High
`Q9M1K5`	Arabidopsis thaliana	sp\|Q9M1K5\|ZDH13_ARATH Probable protein S-acyltransferase 4	37.900%	Swiss-Prot	Low
`Q9M306`	Arabidopsis thaliana	sp\|Q9M306\|ZDH10_ARATH Probable protein S-acyltransferase 5	34.800%	Swiss-Prot	Low
`Q9SB58`	Arabidopsis thaliana	sp\|Q9SB58\|ZDH19_ARATH Protein S-acyltransferase 8	36.800%	Swiss-Prot	Low

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