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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G100970
Reference: TK1151 Chr: Chr03 Coordinates: 25500133-25503675 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1707 bp · TkA03G100970|TK1151|cDNA

ATGGGTCCAAGTGGTGCGGGGAAGTCTACTTTTTTGGATGGGTTAGCTGGCCGGATTGCTAGTGGGAGCCTTAAGGGTAAGGTGTCATTAGATGGGGCTGAAATGAGTCCAAGTTTGATTAAGAGAACTTCGGCTTATATTATGCAAGATGACCGGTTATTTCCGATGTTGACCGTTTATGAAACGTTAATGTTTGCTGCTGATTTCCGGTTAGGGTCTATTCCTAAGGCTGAAAAGAGACGGCGGGTTGAGATGTTGAT...

CDS

Download CDS FASTA

1707 bp · TkA03G100970|TK1151|CDS

ATGGGTCCAAGTGGTGCGGGGAAGTCTACTTTTTTGGATGGGTTAGCTGGCCGGATTGCTAGTGGGAGCCTTAAGGGTAAGGTGTCATTAGATGGGGCTGAAATGAGTCCAAGTTTGATTAAGAGAACTTCGGCTTATATTATGCAAGATGACCGGTTATTTCCGATGTTGACCGTTTATGAAACGTTAATGTTTGCTGCTGATTTCCGGTTAGGGTCTATTCCTAAGGCTGAAAAGAGACGGCGGGTTGAGATGTTGAT...

Protein

Download Protein FASTA

568 aa · TkA03G100970|TK1151|PROTEIN

MGPSGAGKSTFLDGLAGRIASGSLKGKVSLDGAEMSPSLIKRTSAYIMQDDRLFPMLTVYETLMFAADFRLGSIPKAEKRRRVEMLIEQLGLSSARNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAQSVIEKVHNIAQTGSTVVLTIHQPSSRILLLLDHLIILARGQLMYQGSPKEVASHLGRMGRKVPKGESPIEFLIDVIQRYDQSEYGVDALAEFVVTGMKPPELSDDGDTLSSTTTPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G100970
TK1151 IDTkA03G100970
OH-1004 IDLXL04_006952
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)85.800
Protein coverage (%)TK1151 95.070 / OH-1004 64.958
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G100970
LocationChr03:25500133-25503675 (+)
DescriptionSimilar to STR2: ABC transporter G family member STR2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13580 ABC transporter G family member 6. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006952 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007034 vacuolar transport Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0010345 suberin biosynthetic process Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005775 vacuolar lumen Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0085042 periarbuscular membrane Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G53510
ath:AT3G55110
ath:AT3G55130
mtr:11407838
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.435
Rank 1 · TkA03G100970 · TK1151
Lysosome / Vacuole0.251
Rank 2 · TkA03G100970 · TK1151
Endoplasmic reticulum0.134
Rank 3 · TkA03G100970 · TK1151
Cytoplasm0.124
Rank 4 · TkA03G100970 · TK1151
Golgi apparatus0.104
Rank 5 · TkA03G100970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran1-136 aa
PF13555AAA_291-15 aa
PF13481AAA_251-57 aa
PF13304AAA_212-16 aa
PF05729NACHT2-27 aa
PF13304AAA_21126-167 aa
PF13481AAA_25139-165 aa
PF13605DUF4141143-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G100970PF00005ABC_tran11361.2e-2281.7
TkA03G100970PF13555AAA_291150.02715.0
TkA03G100970PF13481AAA_251570.2711.5
TkA03G100970PF13304AAA_212168.8e-0523.3
TkA03G100970PF05729NACHT2270.1612.5
TkA03G100970PF13304AAA_211261678.8e-0523.3
TkA03G100970PF13481AAA_251391650.2711.5
TkA03G100970PF13605DUF41411431630.4910.6
TkA03G100970PF05729NACHT1471780.1612.5
TkA03G100970PF19055ABC2_membrane_71652215.3e-0626.3
TkA03G100970PF01061ABC2_membrane2985047.1e-40137.5
TkA03G100970PF19055ABC2_membrane_73173875.3e-0626.3
TkA03G100970PF12698ABC2_membrane_33213630.004316.9
TkA03G100970PF12679ABC2_membrane_23213590.3410.8
TkA03G100970PF12698ABC2_membrane_33495000.004316.9
TkA03G100970PF12679ABC2_membrane_23905630.3410.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNB5Arabidopsis thalianasp|Q9FNB5|AB6G_ARATH ABC transporter G family member 642.500%Swiss-ProtMedium

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