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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G088850
Reference: TK1151 Chr: Chr03 Coordinates: 22598695-22601233 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1403 bp · TkA03G088850|TK1151|cDNA

CGGGCGGAAAAGAAAGCGAAACAGTTTAGGGTTTTAGGTTATTGTTGGAAGCCTGTAAAATTTTGTTAATTCGGTGTTGCGAAAGAACGAAAAAATGGTGAATCCGCGGTGTTATTTGGATATAAGCATCGGAGGTGAGCTTGAAGGGAGATTAGTGGTGGAGCTTTACAAAGACATTGTTCCCAAAACTGCTGAGAATTTTAGGGCTCTTTGTACTGGAGAAAAGGGTATTGGTCCTAACACTGGCGTTCCTCTTCATT...

CDS

Download CDS FASTA

1086 bp · TkA03G088850|TK1151|CDS

ATGGTGAATCCGCGGTGTTATTTGGATATAAGCATCGGAGGTGAGCTTGAAGGGAGATTAGTGGTGGAGCTTTACAAAGACATTGTTCCCAAAACTGCTGAGAATTTTAGGGCTCTTTGTACTGGAGAAAAGGGTATTGGTCCTAACACTGGCGTTCCTCTTCATTTGAAGGGCTCATGTTTCCACCGTGTAATCAAAGGCTTCATGATCCAAGGTGGAGACATATCAGCAAGAAACGGAACGGGAGGCGAATCAATCTA...

Protein

Download Protein FASTA

361 aa · TkA03G088850|TK1151|PROTEIN

MVNPRCYLDISIGGELEGRLVVELYKDIVPKTAENFRALCTGEKGIGPNTGVPLHLKGSCFHRVIKGFMIQGGDISARNGTGGESIYGSKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVVKGMGVVRSVEHTTTGEHDLPTQDVVIEDCGELLEGADDGVCDFFKDGDTYPDWPLDLDVKPEEVSWWMTAVDAIKAFGNEQFKKQDYKNALRKYRKALRYLDVCWEKEDIDEGKTDSLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G088850
TK1151 IDTkA03G088850
OH-1004 IDLXL04_006919
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)89.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G088850
LocationChr03:22598695-22601233 (-)
DescriptionSimilar to CYP40: Peptidyl-prolyl cis-trans isomerase CYP40
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g15790 PPIases accelerate the folding of proteins.
Regulation of vegetative phase change in Arabidopsis thaliana by cyclophilin 40.2001 · DOI: 10.1126/science.1057144

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006919 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000413 protein peptidyl-prolyl isomerization Biological Process
GO:0006457 protein folding Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0010050 vegetative phase change Biological Process
GO:0010582 floral meristem determinacy Biological Process
GO:0015031 protein transport Biological Process
GO:0019076 viral release from host cell Biological Process
GO:0034389 lipid droplet organization Biological Process
GO:0045070 positive regulation of viral genome replication Biological Process
GO:0050714 positive regulation of protein secretion Biological Process
GO:0051881 regulation of mitochondrial membrane potential Biological Process
KEGG gene cross-reference
ath:AT2G15790
bta:281420
hsa:5481
mmu:67738
rno:361967
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598
Rank 1 · TkA03G088850 · TK1151
Nucleus0.355
Rank 2 · TkA03G088850 · TK1151
Mitochondrion0.137
Rank 3 · TkA03G088850 · TK1151
Endoplasmic reticulum0.068
Rank 4 · TkA03G088850 · TK1151
Cell membrane0.064
Rank 5 · TkA03G088850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00160Pro_isomerase7-171 aa
PF23914TPR_CcmH_CycH212-243 aa
PF13432TPR_16217-241 aa
PF07719TPR_2219-241 aa
PF00515TPR_1219-240 aa
PF13414TPR_11219-240 aa
PF13181TPR_8219-240 aa
PF10952DUF2753219-249 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G088850PF00160Pro_isomerase71718.9e-50169.7
TkA03G088850PF23914TPR_CcmH_CycH2122435.2e-0833.6
TkA03G088850PF13432TPR_162172411.6e-0525.9
TkA03G088850PF07719TPR_22192419.3e-1141.7
TkA03G088850PF00515TPR_12192402.6e-0937.2
TkA03G088850PF13414TPR_112192401e-0629.0
TkA03G088850PF13181TPR_82192401.8e-0628.4
TkA03G088850PF10952DUF27532192490.06514.1
TkA03G088850PF13428TPR_142232400.000621.0
TkA03G088850PF24575TPR_Slam2232390.1413.3
TkA03G088850PF04212MIT2242610.00218.9
TkA03G088850PF14559TPR_192242400.007617.3
TkA03G088850PF13174TPR_62242390.02316.0
TkA03G088850PF25058ARM_TT212243600.4211.3
TkA03G088850PF13176TPR_72252400.002418.5
TkA03G088850PF00515TPR_12732912.6e-0937.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C566Arabidopsis thalianasp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP4076.700%Swiss-ProtHigh

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