TkA03G081220 | RubberDandelionOmics

Gene overview

TkA03G081220

Reference: TK1151 Chr: Chr03 Coordinates: 20720332-20723723 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2039 bp · TkA03G081220|TK1151|cDNA

GTGGCTTTTCAGGTATTATATCCCATATAAAAAGGCAGAAATTCGTTAATTTCTTCGGACAGAATATCCCAGTTTGGTAAAGGAAAGTGGAAAATGCTTCAAAATTGTATTCTTTCTCCGTGGAGCTGTTGATGCTTCTTCGTCCTTCCCGGCTTTCCCCTGTCTGAAACGATGGCACCAGCTCCGATGAGCGATGAAGGAAGTTCCGATCTTCAACTCACAAAGAATGATCTGAAAACCCCTTATTCACTTGAAGCCTA...

CDS

Download CDS FASTA

948 bp · TkA03G081220|TK1151|CDS

ATGGCACCAGCTCCGATGAGCGATGAAGGAAGTTCCGATCTTCAACTCACAAAGAATGATCTGAAAACCCCTTATTCACTTGAAGCCTATGTGACTATCGCTCAACTACCACGATCAGAAACCCCCAATTCACTAGAAGCCGGTGTGACTATCGCTCAACTACCACCATCAGAAGCCTCTCCTCCTCCTGCTCCTTTTACACCTTCAACTAAATCATCGGGTAAACGGAAGAGGTTGACGCCATCGAAATACGAAATTCC...

Protein

Download Protein FASTA

315 aa · TkA03G081220|TK1151|PROTEIN

MAPAPMSDEGSSDLQLTKNDLKTPYSLEAYVTIAQLPRSETPNSLEAGVTIAQLPPSEASPPPAPFTPSTKSSGKRKRLTPSKYEIPVHNAEKKRSLLKHKAIRDPSKTCLKSDQISPTMIRAGEIQSSLGTNHPTFKKIMVKSHVVSCFWMGIPVPFSRSYLPIQDTLMVIEDENGQQCNVKYIRHKHGLSAGWRRFAIVHKLVEGDALVFQLVESSKFKVYIVRANESKQVDGVDHDLLNHNERNKLKARAKMAYIRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G081220`
TK1151 ID	TkA03G081220
OH-1004 ID	LXL04_006852
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 90.476 / OH-1004 53.571 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G081220

Location Chr03:20720332-20723723 (-)

Description Similar to Os06g0194400: B3 domain-containing protein Os06g0194400

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58280`	Putative B3 domain-containing protein At5g58280.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0194400`	B3 domain-containing protein Os06g0194400.	No verified direct reference in this release
`Os05g0481400`	B3 domain-containing protein Os05g0481400.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006852 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G19184

dosa:Os01g0234100

dosa:Os05g0481400

dosa:Os06g0194400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.967

Rank 1 · TkA03G081220 · TK1151

Cytoplasm0.087

Rank 2 · TkA03G081220 · TK1151

Cell membrane0.020

Rank 3 · TkA03G081220 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA03G081220 · TK1151

Mitochondrion0.009

Rank 5 · TkA03G081220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362B3137-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G081220	`PF02362`	B3	137	227	5.3e-18	65.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHB2`	Arabidopsis thaliana	sp\|Q9FHB2\|Y5828_ARATH Putative B3 domain-containing protein At5g58280	48.100%	Swiss-Prot	Low
`Q69V36`	Oryza sativa subsp. japonica	sp\|Q69V36\|Y6944_ORYSJ B3 domain-containing protein Os06g0194400	43.900%	Swiss-Prot	Low
`Q5KQI4`	Oryza sativa subsp. japonica	sp\|Q5KQI4\|Y5814_ORYSJ B3 domain-containing protein Os05g0481400	46.600%	Swiss-Prot	Low

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