LXL04_006852 | RubberDandelionOmics

Gene overview

LXL04_006852

Reference: OH-1004 Chr: Chr02 Coordinates: 27834694-27837672 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1599 bp · LXL04_006852|LXL04_006852|OH1004|cDNA

ATGGCACCAGCTCCGATGAGCGATGAAGGAAGTTCCGATCTTCAACTCACAAAGAATGATCTGAAAACCCCTTATTCACTTGAAGCCTATGTGACTATCGCTCAACTACCACGATCAGAAACCCCCAATTCACTAGAAGCCGGTGTGACTATCGCTCAACTACCACCATCAGAAGCCTCTCCTCCTCCTGCCCCTTTTACACCTTCAACTAAATCAtcgGGTAAACGGAAGAGGTTGACGCCATCGAAATACGAAATTCC...

CDS

Download CDS FASTA

1599 bp · LXL04_006852|LXL04_006852|OH1004|CDS

ATGGCACCAGCTCCGATGAGCGATGAAGGAAGTTCCGATCTTCAACTCACAAAGAATGATCTGAAAACCCCTTATTCACTTGAAGCCTATGTGACTATCGCTCAACTACCACGATCAGAAACCCCCAATTCACTAGAAGCCGGTGTGACTATCGCTCAACTACCACCATCAGAAGCCTCTCCTCCTCCTGCCCCTTTTACACCTTCAACTAAATCATCGGGTAAACGGAAGAGGTTGACGCCATCGAAATACGAAATTCC...

Protein

Download Protein FASTA

532 aa · LXL04_006852|LXL04_006852|OH1004|PROTEIN

MAPAPMSDEGSSDLQLTKNDLKTPYSLEAYVTIAQLPRSETPNSLEAGVTIAQLPPSEASPPPAPFTPSTKSSGKRKRLTPSKYEIPFHNAEKKRSLLKHKAIRDPSKTCLKSDQISPTMIRAGEIQSSLGAHHPTFKKVMVKSHVVSCFWMGIPVPFSRSYLPIQDTLMVIEDENGQQCNVKYIRHKHGLSAGWRRFAIVHKLVEGDALVFQLVESSKFKVYIVRANESKQVDGVDHDLLNHNERNKLKARAKMAYIRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006852`
TK1151 ID	TkA03G081220
OH-1004 ID	LXL04_006852
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 90.476 / OH-1004 53.571 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006852

Location Chr02:27834694-27837672 (-)

Description Similar to Os06g0194400: B3 domain-containing protein Os06g0194400

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19184`	B3 domain-containing protein At3g19184.	No verified direct reference in this release
`At5g42700`	B3 domain-containing protein At5g42700.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0194400`	B3 domain-containing protein Os06g0194400.	No verified direct reference in this release
`Os01g0234100`	B3 domain-containing protein Os01g0234100.	No verified direct reference in this release
`Os05g0481400`	B3 domain-containing protein Os05g0481400.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006852 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G19184

dosa:Os01g0234100

dosa:Os05g0481400

dosa:Os06g0194400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.945

Rank 1 · LXL04_006852 · OH-1004

Cytoplasm0.107

Rank 2 · LXL04_006852 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_006852 · OH-1004

Endoplasmic reticulum0.015

Rank 4 · LXL04_006852 · OH-1004

Mitochondrion0.009

Rank 5 · LXL04_006852 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362.27B3137-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006852	`PF02362.27`	B3	137	227	7e-18	65.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1G3M3`	Arabidopsis thaliana	B3 domain-containing protein At3g19184	41.727%	Swiss-Prot	weak database homology
`Q9FMZ4`	Arabidopsis thaliana	B3 domain-containing protein At5g42700	42.400%	Swiss-Prot	weak database homology
`Q69V36`	Oryza sativa subsp. japonica	B3 domain-containing protein Os06g0194400	41.176%	Swiss-Prot	weak database homology
`Q0JP99`	Oryza sativa subsp. japonica	B3 domain-containing protein Os01g0234100	56.075%	Swiss-Prot	weak database homology
`Q5KQI4`	Oryza sativa subsp. japonica	B3 domain-containing protein Os05g0481400	42.647%	Swiss-Prot	weak database homology

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