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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G059730
Reference: TK1151 Chr: Chr03 Coordinates: 15347105-15352683 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3878 bp · TkA03G059730|TK1151|cDNA

ATATAAAACATTTTCGATTCACGCGGTGTAAACGCGTTTCAGGCTCTAACACGTCGAAAAAGGGAATAGAGACCCTACTCTGGTCTTTCTACAAAAACACAAAGCAATCCATTGGAACCTTCGCTCCAATTTCCTCTCAACTAGGATGACTGATAGCCCAATCAGCCATTCTCTTTCACCTGCTTCAACAATCGCGTTTTTGCTATCGTTTTTTGAATTTGGTATTCGTACAGAAGTCTTACGAAGTTTCTTCGACCTTT...

CDS

Download CDS FASTA

3018 bp · TkA03G059730|TK1151|CDS

ATGGAGAATTACTTGAATGAGAATTTCGGCGGAGTGAAGCCGAAGAATTCGTCGGAGGAGGTGTTACAGAGATGGAGGAAGATGTGTGGTCTTGTGAAGAACCCTAAACGAAGGTTCCGTTTCACGGCCAACCTCAGTAAGCGTAACGAGGCTGCTGCTATGCGTCGCACCAATCAGAAGTTGAGGGTTGCGGTTTTGGTGTCGAAGGCAGCATTTCAGTTTGCAAAATTCGCGGAACCCAGTGATTATACGTTACCCGA...

Protein

Download Protein FASTA

1005 aa · TkA03G059730|TK1151|PROTEIN

MENYLNENFGGVKPKNSSEEVLQRWRKMCGLVKNPKRRFRFTANLSKRNEAAAMRRTNQKLRVAVLVSKAAFQFAKFAEPSDYTLPDEFKEAGFDISADEAGAVVENHDPVKLKFYGGVDGLAKKLKTCTTKGIAIDDKDLTRRKELFGTNEFTEREQRSFWVFVWEAFQDMTLMVLAACAIVSLIVGVATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFRDLDKEKKKISIQVTREGYRQKLSIYELLPGDIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G059730
TK1151 IDTkA03G059730
OH-1004 IDLXL04_007935
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)70.700
Protein coverage (%)TK1151 100.000 / OH-1004 99.708
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G059730
LocationChr03:15347105-15352683 (+)
DescriptionSimilar to ACA1: Calcium-transporting ATPase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37640 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into the endoplasmic reticulum. No verified direct reference in this release
At2g22950 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. No verified direct reference in this release
At1g27770 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0586600 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles. No verified direct reference in this release
Os03g0616400 This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007935 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0070588 calcium ion transmembrane transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0005262 calcium channel activity Molecular Function
GO:0005388 P-type calcium transporter activity Molecular Function
GO:0005516 calmodulin binding Molecular Function
KEGG gene cross-reference
ath:AT1G27770
ath:AT2G22950
ath:AT4G37640
dosa:Os03g0616400
dosa:Os12g0586600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.414
Rank 1 · TkA03G059730 · TK1151
Endoplasmic reticulum0.235
Rank 2 · TkA03G059730 · TK1151
Lysosome / Vacuole0.161
Rank 3 · TkA03G059730 · TK1151
Golgi apparatus0.138
Rank 4 · TkA03G059730 · TK1151
Cytoplasm0.118
Rank 5 · TkA03G059730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12515CaATP_NAI5-50 aa
PF00702Hydrolase13-33 aa
PF00690Cation_ATPase_N117-184 aa
PF00689Cation_ATPase_C169-226 aa
PF00122E1-E2_ATPase236-333 aa
PF00689Cation_ATPase_C351-399 aa
PF24380DUF7536355-384 aa
PF00702Hydrolase450-757 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G059730PF12515CaATP_NAI5502.9e-2278.6
TkA03G059730PF00702Hydrolase13333.4e-1454.4
TkA03G059730PF00690Cation_ATPase_N1171841.4e-1454.2
TkA03G059730PF00689Cation_ATPase_C1692261.4e-45156.0
TkA03G059730PF00122E1-E2_ATPase2363336.5e-2278.0
TkA03G059730PF00689Cation_ATPase_C3513991.4e-45156.0
TkA03G059730PF24380DUF75363553846.87.5
TkA03G059730PF00702Hydrolase4507573.4e-1454.4
TkA03G059730PF13246Cation_ATPase4886501.1e-34120.5
TkA03G059730PF08282Hydrolase_36536860.0001921.9
TkA03G059730PF08282Hydrolase_37287850.0001921.9
TkA03G059730PF00689Cation_ATPase_C82810021.4e-45156.0
TkA03G059730PF24380DUF75369509776.87.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81108Arabidopsis thalianasp|O81108|ACA2_ARATH Calcium-transporting ATPase 2, plasma membrane-type78.300%Swiss-ProtHigh
O64806Arabidopsis thalianasp|O64806|ACA7_ARATH Putative calcium-transporting ATPase 7, plasma membrane-type78.200%Swiss-ProtHigh
Q37145Arabidopsis thalianasp|Q37145|ACA1_ARATH Calcium-transporting ATPase 174.700%Swiss-ProtHigh
Q2QMX9Oryza sativa subsp. japonicasp|Q2QMX9|ACA10_ORYSJ Calcium-transporting ATPase 10, plasma membrane-type73.000%Swiss-ProtHigh
Q6ATV4Oryza sativa subsp. japonicasp|Q6ATV4|ACA3_ORYSJ Calcium-transporting ATPase 3, plasma membrane-type67.800%Swiss-ProtHigh

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