TkA03G024840 | RubberDandelionOmics

Gene overview

TkA03G024840

Reference: TK1151 Chr: Chr03 Coordinates: 6398816-6404036 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1675 bp · TkA03G024840|TK1151|cDNA

GAAGCATTTGAAAGGAGATGAGTAGATATTTATATGCACTACCGATAAGAGAGTACCGGTACTGTCACAACAAGCCTCGATGCCATAATTACCACCGGAGAAAAAACGAACGGACCTGATACAAATTCGCTGTCTACTGCAACTGAAAATTTCGAAATTTAGGTGGTTTACAGGAGGAAAATGGGAGTGGTAATGGCGTGGAATGGTTACATGCTTCCTCCGCAAACGGAAGGTAAAGTTACATCTCCTGCACGGCGGTT...

CDS

Download CDS FASTA

1503 bp · TkA03G024840|TK1151|CDS

ATGGGAGTGGTAATGGCGTGGAATGGTTACATGCTTCCTCCGCAAACGGAAGGTAAAGTTACATCTCCTGCACGGCGGTTTGTCGGTCGCCGGAAACTCTGTTTCGATGGAATTTCCTCCGTGTGTTCGTCCTCAGACACGCATCATGACGATGACTCGGTTGCACCTCGTCATCGCGTCTTCACCAAAACAGTTGGTGAAAAAACACTTAAAGATCTGAAAGAGGTTACGAGTGGTTTTCTTACAACACGCAGAATGCT...

Protein

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500 aa · TkA03G024840|TK1151|PROTEIN

MGVVMAWNGYMLPPQTEGKVTSPARRFVGRRKLCFDGISSVCSSSDTHHDDDSVAPRHRVFTKTVGEKTLKDLKEVTSGFLTTRRMLLTSLLMPLYYPPSRYSSGSNNPFPSFHSVSFNPSSVFFLTFCMNISRAANALGDPSVTLEQVTPVVIPSGPLFPPEERIVKLFENNTYSVVNIFDVTLRPQLNVTGVVEIPEGNGSGVVWDEEGHIVTNYHVIGNSLSRNPQPGQVVARVNILASEGVQKNFEAKLIGADRSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G024840`
TK1151 ID	TkA03G024840
OH-1004 ID	LXL04_006278
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G024840

Location Chr03:6398816-6404036 (+)

Description Similar to DEGP8: Protease Do-like 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39830`	Probable serine protease.	No verified direct reference in this release
`At3g27925`	Serine protease that is required at high temperature.	High light stimulates Deg1-dependent cleavage of the minor LHCII antenna proteins CP26 and CP29 and the PsbS protein in Arabidopsis thaliana.2012 · DOI: 10.1007/s00425-011-1505-x Identification and characterization of DegP, a serine protease associated with the luminal side of the thylakoid membrane.1998 · DOI: 10.1074/jbc.273.12.7094
`At4g18370`	Probable serine protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006278 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0010206 photosystem II repair Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009579 thylakoid Cellular Component

KEGG gene cross-reference

ath:AT3G27925

ath:AT4G18370

ath:AT5G39830

bme:BMEI1330

bmel:DK63_73

bms:BR0611

bsi:BS1330_I0607

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · TkA03G024840 · TK1151

Mitochondrion0.029

Rank 2 · TkA03G024840 · TK1151

Cytoplasm0.018

Rank 3 · TkA03G024840 · TK1151

Nucleus0.013

Rank 4 · TkA03G024840 · TK1151

Peroxisome0.012

Rank 5 · TkA03G024840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02907Peptidase_S29136-174 aa

PF13365Trypsin_2202-359 aa

PF00089Trypsin203-385 aa

PF02907Peptidase_S29257-285 aa

PF02907Peptidase_S29343-381 aa

PF13180PDZ_2418-495 aa

PF17820PDZ_6426-436 aa

PF17820PDZ_6443-485 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G024840	`PF02907`	Peptidase_S29	136	174	0.2	12.1
TkA03G024840	`PF13365`	Trypsin_2	202	359	2.4e-25	90.7
TkA03G024840	`PF00089`	Trypsin	203	385	2.5e-13	51.1
TkA03G024840	`PF02907`	Peptidase_S29	257	285	0.2	12.1
TkA03G024840	`PF02907`	Peptidase_S29	343	381	0.2	12.1
TkA03G024840	`PF13180`	PDZ_2	418	495	8.8e-08	33.0
TkA03G024840	`PF17820`	PDZ_6	426	436	1.2e-05	25.7
TkA03G024840	`PF17820`	PDZ_6	443	485	1.2e-05	25.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LU10`	Arabidopsis thaliana	sp\|Q9LU10\|DEGP8_ARATH Protease Do-like 8, chloroplastic	74.200%	Swiss-Prot	High
`O22609`	Arabidopsis thaliana	sp\|O22609\|DEGP1_ARATH Protease Do-like 1, chloroplastic	46.100%	Swiss-Prot	Medium
`Q9SEL7`	Arabidopsis thaliana	sp\|Q9SEL7\|DEGP5_ARATH Protease Do-like 5, chloroplastic	42.200%	Swiss-Prot	Low

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