TkA03G015970 | RubberDandelionOmics

Gene overview

TkA03G015970

Reference: TK1151 Chr: Chr03 Coordinates: 4119721-4124065 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2424 bp · TkA03G015970|TK1151|cDNA

ATGTCTAAAAAGATTGATGGCATTCCATCTACCCTCTCCCCAAAAAATTTGGAGGAGATCACTCGAGCGTATCACATTGATCCTTCTTTCCGTCCCCGTCTTCCTGAAAATGGGGAAACCATTCTAACTCCCCCTTCTGGGATGATCGGGGTTTATAGCATATTTATGCGTGCTGGCCTTCGATTTCCCGTTTGCTCTTTGATAGCAACCATCCTTGCTCATTATCGTCTTCAACTTGGCCAGATAACCCCCAACGACGC...

CDS

Download CDS FASTA

2424 bp · TkA03G015970|TK1151|CDS

ATGTCTAAAAAGATTGATGGCATTCCATCTACCCTCTCCCCAAAAAATTTGGAGGAGATCACTCGAGCGTATCACATTGATCCTTCTTTCCGTCCCCGTCTTCCTGAAAATGGGGAAACCATTCTAACTCCCCCTTCTGGGATGATCGGGGTTTATAGCATATTTATGCGTGCTGGCCTTCGATTTCCCGTTTGCTCTTTGATAGCAACCATCCTTGCTCATTATCGTCTTCAACTTGGCCAGATAACCCCCAACGACGC...

Protein

Download Protein FASTA

807 aa · TkA03G015970|TK1151|PROTEIN

MSKKIDGIPSTLSPKNLEEITRAYHIDPSFRPRLPENGETILTPPSGMIGVYSIFMRAGLRFPVCSLIATILAHYRLQLGQITPNDAKALGLQLSNADDSLRGPDSPPLLSPEEMKMTELLSQHCVKWIDPDEVVLAMAGLSPKWDSTDRLARKEYSQAISIAEAPLLVAPEGTLEGITATQSGNSSVPPADSEVKHAAPESSDLSDTMPLSKSLKHVLRNTPARVGSKIKSSKRGLSGSVDAEPIDVDSLPEKDHSRAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G015970`
TK1151 ID	TkA03G015970
OH-1004 ID	LXL04_025394
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	28.500
Protein coverage (%)	TK1151 95.539 / OH-1004 67.852 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G015970`
Location	Chr03:4119721-4124065 (+)
Description	Similar to HAT: Zinc finger BED domain-containing protein DAYSLEEPER
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025394` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0009791 post-embryonic development Biological Process GO:0032196 transposition Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference	ath:AT3G42170 dosa:Os01g0518400 dosa:Os03g0733400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901

Rank 1 · TkA03G015970 · TK1151

Cytoplasm0.198

Rank 2 · TkA03G015970 · TK1151

Mitochondrion0.025

Rank 3 · TkA03G015970 · TK1151

Cell membrane0.018

Rank 4 · TkA03G015970 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA03G015970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04195Transposase_2853-88 aa

PF07926TPR_MLP1_2485-568 aa

PF30378CEP135_TSGA10_CC508-638 aa

PF08614ATG16508-633 aa

PF30907IPGA1_CC510-540 aa

PF10473CENP-F_leu_zip513-629 aa

PF30907IPGA1_CC565-635 aa

PF07926TPR_MLP1_2573-642 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G015970	`PF04195`	Transposase_28	53	88	4.7e-05	24.2
TkA03G015970	`PF07926`	TPR_MLP1_2	485	568	8.0	7.2
TkA03G015970	`PF30378`	CEP135_TSGA10_CC	508	638	0.11	11.5
TkA03G015970	`PF08614`	ATG16	508	633	0.89	10.4
TkA03G015970	`PF30907`	IPGA1_CC	510	540	0.13	13.4
TkA03G015970	`PF10473`	CENP-F_leu_zip	513	629	0.93	10.3
TkA03G015970	`PF30907`	IPGA1_CC	565	635	0.13	13.4
TkA03G015970	`PF07926`	TPR_MLP1_2	573	642	8.0	7.2
TkA03G015970	`PF16799`	VGPC1_C	580	616	0.081	13.7
TkA03G015970	`PF10473`	CENP-F_leu_zip	620	636	0.93	10.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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