LXL04_025394 | RubberDandelionOmics

Gene overview

LXL04_025394

Reference: OH-1004 Chr: Chr05 Coordinates: 111033267-111037931 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4053 bp · LXL04_025394|LXL04_025394|OH1004|cDNA

ATGGATACCATTACTTGTTCGCTCACTTCCGAGAACCTAGCTGAAATTCGCGAGAATTTCAAGCTTAGCGCCGCTTTGAAACTTGAACTCCCATCTGAAAATCAAACGATTAAGACCCCTCCTGAGGGTTACGTCGGCATCTATCACCAATTTCTGAAGGCTGGGCTTCGGTTCCCTGTTTTCGATTTTCTGAAAACCGTTCTTAGCCATTACAAACTACACATTGCCCAATTAGCGCCCAACTCATTTCGAAAAATTAT...

CDS

Download CDS FASTA

4053 bp · LXL04_025394|LXL04_025394|OH1004|CDS

ATGGATACCATTACTTGTTCGCTCACTTCCGAGAACCTAGCTGAAATTCGCGAGAATTTCAAGCTTAGCGCCGCTTTGAAACTTGAACTCCCATCTGAAAATCAAACGATTAAGACCCCTCCTGAGGGTTACGTCGGCATCTATCACCAATTTCTGAAGGCTGGGCTTCGGTTCCCTGTTTTCGATTTTCTGAAAACCGTTCTTAGCCATTACAAACTACACATTGCCCAATTAGCGCCCAACTCATTTCGAAAAATTAT...

Protein

Download Protein FASTA

1350 aa · LXL04_025394|LXL04_025394|OH1004|PROTEIN

MDTITCSLTSENLAEIRENFKLSAALKLELPSENQTIKTPPEGYVGIYHQFLKAGLRFPVFDFLKTVLSHYKLHIAQLAPNSFRKIICFVMLSRALGVTPSLILFRHFYVTLNTGDWVSFTRRQGVDDIGDCFPSSIKNWKPEFLFVDAKEFNADMSFGEHKNRTVDHPPELSAEQKQIVDQMVVNTVKWSDPDEVTLGMAGLSSYWVGRGKQPICLVGGKTVTLLDRLQRKKFKGTIEVTEGPISDFLGPSVLDTVMEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025394`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025394

Location Chr05:111033267-111037931 (-)

Description Similar to HAT: Zinc finger BED domain-containing protein DAYSLEEPER

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g42170`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0518400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os03g0733400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025394 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G42170

dosa:Os01g0518400

dosa:Os03g0733400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.888

Rank 1 · LXL04_025394 · OH-1004

Cytoplasm0.188

Rank 2 · LXL04_025394 · OH-1004

Mitochondrion0.026

Rank 3 · LXL04_025394 · OH-1004

Cell membrane0.023

Rank 4 · LXL04_025394 · OH-1004

Endoplasmic reticulum0.014

Rank 5 · LXL04_025394 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04195.18Transposase_2848-110 aa

PF27041.1ZBED1_RNase-like1308-1338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025394	`PF04195.18`	Transposase_28	48	110	1.5e-16	61.1
LXL04_025394	`PF27041.1`	ZBED1_RNase-like	1308	1338	2.4e-07	31.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2N5`	Arabidopsis thaliana	Zinc finger BED domain-containing protein DAYSLEEPER	31.731%	Swiss-Prot	weak database homology
`Q0JMB2`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 4	28.141%	Swiss-Prot	weak database homology
`Q6AVI0`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 2	28.037%	Swiss-Prot	weak database homology

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