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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G012250
Reference: TK1151 Chr: Chr03 Coordinates: 3161970-3166029 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2479 bp · TkA03G012250|TK1151|cDNA

CAACATTCCACCGCCCTCTCTCTCTCTCTTACCCCCAATTTGGTTGACATTGACTAATATCTGTTCATATCTTCCGCAATAATTTCACATACACATCAACCTTATTCAAAAACTTATGCATTTTTCTTCAATCGCCATTTTTGTTCTTCTTCTTCTTCTTCTTATTCTTCTTCTGCAGTTTCAAATATATTCTCGTCTCTCATCCTACATTAACTCACAGCATCAACAACAAGGGTGCTCGTTCGGCAAAAATTCCGTCG...

CDS

Download CDS FASTA

1971 bp · TkA03G012250|TK1151|CDS

ATGCCGAAGAAACTTGCAATGAAGAAACTAGACCCCAATTCGAGCGGTGAAAACTACGTCCCACACAAAGACCAATTCGCGCGTATTTCACCACGAAGCCCCTTGAGCACACACACTCCAGACACCGATTCAATCGATTTATCCATAAGACTCACCGAAAACTCCATGGATCAACTCTACAACAACGTATGCGAAATGGAAAGCTCCGATCAATCTCCCTCAAGTTACTTATCGTACAGTCAGGAATCAAGGATCGATTC...

Protein

Download Protein FASTA

656 aa · TkA03G012250|TK1151|PROTEIN

MPKKLAMKKLDPNSSGENYVPHKDQFARISPRSPLSTHTPDTDSIDLSIRLTENSMDQLYNNVCEMESSDQSPSSYLSYSQESRIDSELRFLARGDFSNIGVKNDEKEPTDSRDNIEKETVVDKSPIARPPSPAKIPKPVSKTASSKKLGGKLSMKKTEEPKYLGPYLLKQARESMSTGDDPKKALDFALRAMNLFESIQSEKPDLELVMCLHIVAALYCVLGELDEAIPIVERSIEITNMNEGQKHSLAKFAGCMQLGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G012250
TK1151 IDTkA03G012250
OH-1004 IDLXL04_023987
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)62.900
Protein coverage (%)TK1151 98.018 / OH-1004 98.206
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G012250
LocationChr03:3161970-3166029 (-)
DescriptionSimilar to KLCR2: Protein KINESIN LIGHT CHAIN-RELATED 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27960 Protein KINESIN LIGHT CHAIN-RELATED 2. No verified direct reference in this release
At1g27500 Protein KINESIN LIGHT CHAIN-RELATED 3. No verified direct reference in this release
At4g10840 Protein KINESIN LIGHT CHAIN-RELATED 1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023987 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007368 determination of left/right symmetry Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0016055 Wnt signaling pathway Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0045494 photoreceptor cell maintenance Biological Process
GO:0060271 cilium assembly Biological Process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry Biological Process
GO:0090090 negative regulation of canonical Wnt signaling pathway Biological Process
GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G27500
ath:AT3G27960
ath:AT4G10840
hsa:27031
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.533
Rank 1 · TkA03G012250 · TK1151
Nucleus0.274
Rank 2 · TkA03G012250 · TK1151
Cell membrane0.197
Rank 3 · TkA03G012250 · TK1151
Golgi apparatus0.084
Rank 4 · TkA03G012250 · TK1151
Lysosome / Vacuole0.073
Rank 5 · TkA03G012250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13424TPR_12180-197 aa
PF09986DUF2225180-243 aa
PF07719TPR_2181-196 aa
PF14559TPR_19191-237 aa
PF12968DUF3856191-240 aa
PF25068ARM_TT21_4th191-286 aa
PF12895ANAPC3191-234 aa
PF25063ARM_TT21_C196-272 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G012250PF13424TPR_121801979.9e-40135.3
TkA03G012250PF09986DUF22251802439.8e-0626.2
TkA03G012250PF07719TPR_21811962.3e-2484.1
TkA03G012250PF14559TPR_191912371.8e-0835.3
TkA03G012250PF12968DUF38561912403.7e-0524.4
TkA03G012250PF25068ARM_TT21_4th1912866e-0524.1
TkA03G012250PF12895ANAPC31912340.02315.7
TkA03G012250PF25063ARM_TT21_C1962720.0007120.2
TkA03G012250PF24885TPR_NPHP31993312.2e-1454.2
TkA03G012250PF10602RPN71992397.5e-0523.2
TkA03G012250PF21033RMD1-32002483.9e-0523.7
TkA03G012250PF29407CFAP70_TPR_C2083136e-0729.9
TkA03G012250PF17874TPR_MalT2093359e-1555.5
TkA03G012250PF13374TPR_102102471.3e-2279.8
TkA03G012250PF07719TPR_22122382.3e-2484.1
TkA03G012250PF13428TPR_142132372.5e-1040.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LII8Arabidopsis thalianasp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 256.600%Swiss-ProtHigh
F4HSX9Arabidopsis thalianasp|F4HSX9|KLCR3_ARATH Protein KINESIN LIGHT CHAIN-RELATED 351.000%Swiss-ProtHigh
O81629Arabidopsis thalianasp|O81629|KLCR1_ARATH Protein KINESIN LIGHT CHAIN-RELATED 148.900%Swiss-ProtMedium

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