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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G010630
Reference: TK1151 Chr: Chr03 Coordinates: 2687889-2695483 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2296 bp · TkA03G010630|TK1151|cDNA

CTCAGCGTTTTGAACTACGAAAGTTCAAAAGAGGTTAGGTGTATTTGCAAGAAATACACCATCAGCGCGTGTCTTTCACCTTCGCCATCTTCGTACTTGTATGTGTTCTTCTTCTTGAGTGTGAAGATACTATCGTTAGAGGGGCTTTCAGCAAAAGCTTCTCTTTCGATTTTTTTTCTGCATCTAAACCTAAATGTATATATATGTTACTCATATTTCTACAAGCTATCTTTCTGTGTATATATTTATGAGATTAAGAG...

CDS

Download CDS FASTA

1803 bp · TkA03G010630|TK1151|CDS

ATGGTACTTTTTCATGGTGAGGTGGATGATATTGATGACATTGATTGGGATACAGAAGATGAACTTGAAATACAGAACATAGGATCATCTTCTTGTTCAACTTTAGTAACTAGCAATACTCAAACTGCTATTATCAGCAATGGGGAGGCAAGCTCATCAGCAAGCTCCTCAAACTCCAAGTTGCTACAGCATTTCCTAGGAATGGGGTTCTCTGACAAATTGATTATAAAAGCAATCGAAGAAAATGGGGAAGATAACCC...

Protein

Download Protein FASTA

600 aa · TkA03G010630|TK1151|PROTEIN

MVLFHGEVDDIDDIDWDTEDELEIQNIGSSSCSTLVTSNTQTAIISNGEASSSASSSNSKLLQHFLGMGFSDKLIIKAIEENGEDNPESILETLLTYSALEEPQDGNFSCHTNSHQQQQENVNYDDFSSDYDETIPNELSEFDSLSDDEIPENYESLPKHEKTLLSLTKMGYSVEEASAAVERCPDAPIGDLTDFIDVARLAKTEAEFFEEEKPKPLFTLNPKLKRKKLLETYKTKKQKGQLTEEDDLIRLPNPMIGFGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G010630
TK1151 IDTkA03G010630
OH-1004 IDLXL04_006134
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G010630
LocationChr03:2687889-2695483 (-)
DescriptionSimilar to DRM2: DNA (cytosine-5)-methyltransferase DRM2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q9M548 Involved in de novo DNA methylation. No verified direct reference in this release
UniProt: Q9LXE5 Involved in de novo DNA methylation. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0110800 Involved in de novo DNA methylation. No verified direct reference in this release
Os11g0109200 Involved in de novo DNA methylation. No verified direct reference in this release
Os12g0108900 Involved in de novo DNA methylation. No verified direct reference in this release
Os05g0133900 Involved in de novo DNA methylation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006134 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0032259 methylation Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003886 DNA (cytosine-5-)-methyltransferase activity Molecular Function
GO:0008168 methyltransferase activity Molecular Function
GO:0009008 DNA-methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT5G14620
ath:AT5G15380
dosa:Os03g0110800
dosa:Os05g0133900
dosa:Os12g0108900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.769
Rank 1 · TkA03G010630 · TK1151
Cytoplasm0.254
Rank 2 · TkA03G010630 · TK1151
Mitochondrion0.043
Rank 3 · TkA03G010630 · TK1151
Cell membrane0.039
Rank 4 · TkA03G010630 · TK1151
Endoplasmic reticulum0.026
Rank 5 · TkA03G010630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22562UBA_758-88 aa
PF23053UBA_N4BP159-93 aa
PF00627UBA59-79 aa
PF22567UBA_961-96 aa
PF22562UBA_7161-182 aa
PF00627UBA161-184 aa
PF23053UBA_N4BP1168-173 aa
PF22567UBA_9169-182 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G010630PF22562UBA_758880.01116.3
TkA03G010630PF23053UBA_N4BP159930.03914.4
TkA03G010630PF00627UBA59790.2112.2
TkA03G010630PF22567UBA_961960.0009119.8
TkA03G010630PF22562UBA_71611820.01116.3
TkA03G010630PF00627UBA1611840.2112.2
TkA03G010630PF23053UBA_N4BP11681730.03914.4
TkA03G010630PF22567UBA_91691820.0009119.8
TkA03G010630PF22567UBA_93673950.0009119.8
TkA03G010630PF00145DNA_methylase3794619.7e-1245.7
TkA03G010630PF23053UBA_N4BP13823900.03914.4
TkA03G010630PF00627UBA4284360.2112.2
TkA03G010630PF22562UBA_74304350.01116.3
TkA03G010630PF00145DNA_methylase4765909.7e-1245.7
TkA03G010630PF27849MAST4805680.08313.2
TkA03G010630PF23053UBA_N4BP15875920.03914.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M548Arabidopsis thalianasp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM255.700%Swiss-ProtHigh
Q9LXE5Arabidopsis thalianasp|Q9LXE5|DRM1L_ARATH DNA (cytosine-5)-methyltransferase DRM154.600%Swiss-ProtHigh
Q10SU5Oryza sativa subsp. japonicasp|Q10SU5|DRM2_ORYSJ DNA (cytosine-5)-methyltransferase DRM249.600%Swiss-ProtMedium
Q2RBJ4Oryza sativa subsp. japonicasp|Q2RBJ4|DRM1A_ORYSJ DNA (cytosine-5)-methyltransferase DRM1A40.900%Swiss-ProtMedium
Q2QYR5Oryza sativa subsp. japonicasp|Q2QYR5|DRM1B_ORYSJ Probable inactive DNA (cytosine-5)-methyltransferase DRM1B43.900%Swiss-ProtMedium
Q6AUQ7Oryza sativa subsp. japonicasp|Q6AUQ7|DRM3_ORYSJ Probable inactive DNA (cytosine-5)-methyltransferase DRM344.900%Swiss-ProtMedium

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