TkA03G009590 | RubberDandelionOmics

Gene overview

TkA03G009590

Reference: TK1151 Chr: Chr03 Coordinates: 2370104-2373331 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2011 bp · TkA03G009590|TK1151|cDNA

GCCATACGCATCCGGTTCACGGCGTAAATCTGCCCCACGATAAAACCCATTTAAGGCCTTTGGATTACCCTTCTCGGAGATAATTTCGGGGGTCAAGTTGATTTCCTGTATACTAGACTTCAACTTCTTCGCCATAGTTGATTTGGCGATATTCAGTTCAGAAAGCTTGATTGCTGCATTTCGTGGTGTATGGCACCAATGAAGGGAATTCTCTCTCTCCAAAGAGCTGTTCTATCAAGGCATCAATATGCAAACCGGTG...

CDS

Download CDS FASTA

1470 bp · TkA03G009590|TK1151|CDS

ATGGCACCAATGAAGGGAATTCTCTCTCTCCAAAGAGCTGTTCTATCAAGGCATCAATATGCAAACCGGTGGTTAACTCCTACTCCCAGACTCTTCAGCACTCAATCCGCCACAACCGCCAACACCGCCGCCACCCCACCACCACCACCACCGCCCCCGGAAAAAACCCACTTCGGCAACCTCCAAGACTCCGACCGAATCTTCACAAACCTCTACGGCATCCACGACCCCTTCCTCAAAGGCGCAATCAAACGCGGCGA...

Protein

Download Protein FASTA

489 aa · TkA03G009590|TK1151|PROTEIN

MAPMKGILSLQRAVLSRHQYANRWLTPTPRLFSTQSATTANTAATPPPPPPPPEKTHFGNLQDSDRIFTNLYGIHDPFLKGAIKRGDWHRTKDLVTKGADWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRNDPHKLLEGCLIAGVGMRATAAYIYIRGEYVNERLNLETARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G009590`
TK1151 ID	TkA03G009590
OH-1004 ID	LXL04_006105
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 99.796 / OH-1004 96.832 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G009590

Location Chr03:2370104-2373331 (-)

Description Similar to At5g08530: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08530`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006105 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006120 mitochondrial electron transport, NADH to ubiquinone Biological Process

GO:0009060 aerobic respiration Biological Process

GO:0042775 mitochondrial ATP synthesis coupled electron transport Biological Process

GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function

GO:0010181 FMN binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT5G08530

ddi:DDB_G0288875

ggo:101142811

hsa:4723

mmu:17995

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.939

Rank 1 · TkA03G009590 · TK1151

Cytoplasm0.047

Rank 2 · TkA03G009590 · TK1151

Nucleus0.038

Rank 3 · TkA03G009590 · TK1151

Plastid0.023

Rank 4 · TkA03G009590 · TK1151

Cell membrane0.020

Rank 5 · TkA03G009590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22812CR_prot_dom_plant45-56 aa

PF01512Complex1_51K106-275 aa

PF22812CR_prot_dom_plant252-267 aa

PF22461SLBB_2300-382 aa

PF10531SLBB302-350 aa

PF10589NADH_4Fe-4S391-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G009590	`PF22812`	CR_prot_dom_plant	45	56	4.0	8.7
TkA03G009590	`PF01512`	Complex1_51K	106	275	9.1e-45	152.9
TkA03G009590	`PF22812`	CR_prot_dom_plant	252	267	4.0	8.7
TkA03G009590	`PF22461`	SLBB_2	300	382	5.4e-18	65.6
TkA03G009590	`PF10531`	SLBB	302	350	5e-06	27.0
TkA03G009590	`PF10589`	NADH_4Fe-4S	391	474	2.9e-32	111.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FNN5`	Arabidopsis thaliana	sp\|Q9FNN5\|NDUV1_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	90.800%	Swiss-Prot	High

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