LXL04_006105 | RubberDandelionOmics

Gene overview

LXL04_006105

Reference: OH-1004 Chr: Chr02 Coordinates: 1757802-1759411 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1518 bp · LXL04_006105|LXL04_006105|OH1004|cDNA

ATGCATCTTTCTAATTATTCCATTAACATTATCCTGCAACTTTATCAGGCACCAATGAAGGGAATTCTCTCTCTCCAAAGAGCTGTTCTATCAAGGCATCAATATGCAAACCGGTGGTTAACTCCTACTCCCAGACTCTTCAGCACTCAATCCGCCACAACCGCCAACACCGCCGCCaccccaccaccaccaccaccaccgcccccGGAAAAAACCCACTTCGGCAACCTCCAAGACTCCGACCGAATCTTCACAAACCT...

CDS

Download CDS FASTA

1518 bp · LXL04_006105|LXL04_006105|OH1004|CDS

ATGCATCTTTCTAATTATTCCATTAACATTATCCTGCAACTTTATCAGGCACCAATGAAGGGAATTCTCTCTCTCCAAAGAGCTGTTCTATCAAGGCATCAATATGCAAACCGGTGGTTAACTCCTACTCCCAGACTCTTCAGCACTCAATCCGCCACAACCGCCAACACCGCCGCCACCCCACCACCACCACCACCACCGCCCCCGGAAAAAACCCACTTCGGCAACCTCCAAGACTCCGACCGAATCTTCACAAACCT...

Protein

Download Protein FASTA

505 aa · LXL04_006105|LXL04_006105|OH1004|PROTEIN

MHLSNYSINIILQLYQAPMKGILSLQRAVLSRHQYANRWLTPTPRLFSTQSATTANTAATPPPPPPPPPEKTHFGNLQDSDRIFTNLYGIHDPFLKGAIKRGDWHRTKDLVTKGADWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRNDPHKLLEGCLIAGVGMRATAAYIYIRGEYVNERLNLETARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006105`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006105

Location Chr02:1757802-1759411 (-)

Description Similar to At5g08530: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08530`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006105 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006120 mitochondrial electron transport, NADH to ubiquinone Biological Process

GO:0009060 aerobic respiration Biological Process

GO:0042775 mitochondrial ATP synthesis coupled electron transport Biological Process

GO:0042776 proton motive force-driven mitochondrial ATP synthesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function

GO:0010181 FMN binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT5G08530

ddi:DDB_G0288875

ggo:101142811

hsa:4723

mmu:17995

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.928

Rank 1 · LXL04_006105 · OH-1004

Cytoplasm0.055

Rank 2 · LXL04_006105 · OH-1004

Nucleus0.040

Rank 3 · LXL04_006105 · OH-1004

Plastid0.028

Rank 4 · LXL04_006105 · OH-1004

Cell membrane0.019

Rank 5 · LXL04_006105 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01512.23Complex1_51K122-291 aa

PF22461.3SLBB_2316-398 aa

PF10531.16SLBB318-366 aa

PF10589.15NADH_4Fe-4S407-490 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006105	`PF01512.23`	Complex1_51K	122	291	9.7e-45	152.8
LXL04_006105	`PF22461.3`	SLBB_2	316	398	5.6e-18	65.5
LXL04_006105	`PF10531.16`	SLBB	318	366	5.3e-06	26.9
LXL04_006105	`PF10589.15`	NADH_4Fe-4S	407	490	3e-32	111.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FNN5`	Arabidopsis thaliana	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	89.980%	Swiss-Prot	strong database homology

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