TkA03G002460 | RubberDandelionOmics

Gene overview

TkA03G002460

Reference: TK1151 Chr: Chr03 Coordinates: 607554-608700 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1013 bp · TkA03G002460|TK1151|cDNA

TTTATACTTTATACAATTACCATTAGCATTAAGATTATCATAGCATGCCTGTTTGTCGTTTTGCTATACTGCTACAACTGTTGTCTTCTTTTTTTTATAATGTATCCGACAAATTATTATTTTATATGTCTAGGAAAAGGGAAACAAGACTTTTTAGTTAATTTCCTGATAAATACTCGTCTTGTTAACATCCAACTCCTCTTCGATTGTGGTTGTCATTTAGTGCTCCATCTGCACATGGAAATGGAAGATACCATCGA...

CDS

Download CDS FASTA

819 bp · TkA03G002460|TK1151|CDS

TTTATACTTTATACAATTACCATTAGCATTAAGATTATCATAGCATGCCTGTTTGTCGTTTTGCTATACTGCTACAACTGTTGTCTTCTTTTTTTTATAATGTATCCGACAAATTATTATTTTATATGTCTAGGAAAAGGGAAACAAGACTTTTTAGTTAATTTCCTGATAAATACTCGTCTTGTTAACATCCAACTCCTCTTCGATTGTGGTTGTCATTTAGTGCTCCATCTGCACATGGAAATGGAAGATACCATCGA...

Protein

Download Protein FASTA

272 aa · TkA03G002460|TK1151|PROTEIN

FILYTITISIKIIIACLFVVLLYCYNCCLLFFIMYPTNYYFICLGKGKQDFLVNFLINTRLVNIQLLFDCGCHLVLHLHMEMEDTIDTTARSPQMPIGYRFRPTDEEIIIHYLRPKVFSFPLPAATAILHSHRLFLHHPSRLPGDPKEKRYFFCKTSLHRPFSNPAGYWKPIMNSYKFILAPGCNHPIGFKKCFVFYEICDHRRSRTPWILHQFRLLYPLAVKTGEWTVCSIHMSKKHKNFQQIHKKEEESIDGDSSLPM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G002460`
TK1151 ID	TkA03G002460
OH-1004 ID	LXL04_006032
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 88.971 / OH-1004 94.902 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G002460

Location Chr03:607554-608700 (-)

Description Similar to NAC083: NAC domain-containing protein 83

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13180`	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation.	VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis.2010 · DOI: 10.1105/tpc.108.064048 The Arabidopsis NAC transcription factor VNI2 integrates abscisic acid signals into leaf senescence via the COR/RD genes.2011 · DOI: 10.1105/tpc.111.084913 Arabidopsis thaliana NAC083 protein interacts with Mungbean yellow mosaic India virus (MYMIV) Rep protein.2014 · DOI: 10.1007/s11262-013-1028-6
`At2g33480`	Transcription activator of the mannan synthase CSLA9.	No verified direct reference in this release
`At3g04060`	Transcriptional activator that acts as a positive regulator of leaf senescence.	No verified direct reference in this release
`At3g15510`	Transcription factor of the NAC family (Probable).	NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.060160

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006032 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0010089 xylem development Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048608 reproductive structure development Biological Process

GO:0048731 system development Biological Process

GO:1900055 regulation of leaf senescence Biological Process

KEGG gene cross-reference

ath:AT2G33480

ath:AT3G04060

ath:AT5G13180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.636

Rank 1 · TkA03G002460 · TK1151

Cytoplasm0.320

Rank 2 · TkA03G002460 · TK1151

Cell membrane0.092

Rank 3 · TkA03G002460 · TK1151

Endoplasmic reticulum0.074

Rank 4 · TkA03G002460 · TK1151

Mitochondrion0.037

Rank 5 · TkA03G002460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365NAM96-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G002460	`PF02365`	NAM	96	216	2.3e-21	77.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FY93`	Arabidopsis thaliana	sp\|Q9FY93\|NAC83_ARATH NAC domain-containing protein 83	35.300%	Swiss-Prot	Medium
`O22798`	Arabidopsis thaliana	sp\|O22798\|NAC41_ARATH NAC domain-containing protein 41	31.400%	Swiss-Prot	Medium
`Q9SQQ6`	Arabidopsis thaliana	sp\|Q9SQQ6\|NAC46_ARATH NAC domain-containing protein 46	36.000%	Swiss-Prot	Medium
`Q9LD44`	Arabidopsis thaliana	sp\|Q9LD44\|NAC56_ARATH NAC transcription factor 56	36.000%	Swiss-Prot	Low

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