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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G610490
Reference: TK1151 Chr: Chr02 Coordinates: 157497521-157501317 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1992 bp · TkA02G610490|TK1151|cDNA

CTTAACTCTCTCGCGCGCTCTATTTCCGCCACCGTCAGTTACTCCACCGCCTGCCGCAGTTTCCGGAGAATGGAGAGTAGTTGCAGCACTAACGATGTCGGAGAGTGGAAGGCAGAGGAAGCCATAGCTGGTAATGCTGAAGCTCTTCAAGCTCTTCGAGAACTCATAACATATCCTCTGCTCTACTCTAAAGAAGCCAGACAGCTCGGCCTTAAGTGGCCTCGCGGTTTGCTGCTTTACGGTCCTCCTGGCACTGGAAA...

CDS

Download CDS FASTA

1854 bp · TkA02G610490|TK1151|CDS

ATGGAGAGTAGTTGCAGCACTAACGATGTCGGAGAGTGGAAGGCAGAGGAAGCCATAGCTGGTAATGCTGAAGCTCTTCAAGCTCTTCGAGAACTCATAACATATCCTCTGCTCTACTCTAAAGAAGCCAGACAGCTCGGCCTTAAGTGGCCTCGCGGTTTGCTGCTTTACGGTCCTCCTGGCACTGGAAAGACTAGCTTGGTTCGAGCAGTTGTTCATGAATGTGATGCACATTTGATAGTTCTCAGTCCACACTCTGT...

Protein

Download Protein FASTA

617 aa · TkA02G610490|TK1151|PROTEIN

MESSCSTNDVGEWKAEEAIAGNAEALQALRELITYPLLYSKEARQLGLKWPRGLLLYGPPGTGKTSLVRAVVHECDAHLIVLSPHSVHRSHAGESEKILRDAFAEASSHIKLGKPSVIFIDEIDAICPRRDSRRQQDIRIASQLIMLMDSSATSASGTKVVVVASTNRVDALDPALRRSGRFDAEIEVTTPSEQERLQILNLYTKKVPLDPSVKLETIAALCNGYVGADLEALCREATMCALKRSSNGITEATNVCNLLM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G610490
TK1151 IDTkA02G610490
OH-1004 IDLXL04_011397
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)99.700
Protein coverage (%)TK1151 99.190 / OH-1004 99.512
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G610490
LocationChr02:157497521-157501317 (-)
DescriptionSimilar to CDC48B: Cell division control protein 48 homolog B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g03670 Probably functions in cell division and growth processes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011397 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006260 DNA replication Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0015031 protein transport Biological Process
GO:0030154 cell differentiation Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0051301 cell division Biological Process
GO:0090069 regulation of ribosome biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005819 spindle Cellular Component
KEGG gene cross-reference
afu:AF_1297
ath:AT2G03670
hsa:166378
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.391
Rank 1 · TkA02G610490 · TK1151
Peroxisome0.325
Rank 2 · TkA02G610490 · TK1151
Cytoplasm0.163
Rank 3 · TkA02G610490 · TK1151
Plastid0.095
Rank 4 · TkA02G610490 · TK1151
Nucleus0.080
Rank 5 · TkA02G610490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06745ATPase50-67 aa
PF13191AAA_1651-124 aa
PF02367TsaE51-84 aa
PF25199nSTAND_NTPase551-126 aa
PF06068TIP4952-128 aa
PF12775AAA_752-124 aa
PF03215Rad1752-78 aa
PF13555AAA_2952-86 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G610490PF06745ATPase50670.1112.5
TkA02G610490PF13191AAA_16511245.8e-1350.4
TkA02G610490PF02367TsaE51848.3e-0523.3
TkA02G610490PF25199nSTAND_NTPase5511260.001519.1
TkA02G610490PF06068TIP49521286.3e-0936.2
TkA02G610490PF12775AAA_7521241.5e-0525.3
TkA02G610490PF03215Rad1752780.0003121.5
TkA02G610490PF13555AAA_2952860.003617.8
TkA02G610490PF25201nSTAND6521020.01715.9
TkA02G610490PF20703nSTAND1521770.08713.2
TkA02G610490PF24389ORC-CDC6-like52750.1711.3
TkA02G610490PF01078Mg_chelatase53710.0005420.1
TkA02G610490PF00004AAA541895.8e-78260.4
TkA02G610490PF07728AAA_5541771.3e-0938.8
TkA02G610490PF13401AAA_22541631.7e-0938.8
TkA02G610490PF05496RuvB_N541273e-0937.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZPR1Arabidopsis thalianasp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B70.000%Swiss-ProtHigh

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