TkA02G609860 | RubberDandelionOmics

Gene overview

TkA02G609860

Reference: TK1151 Chr: Chr02 Coordinates: 157314884-157315503 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

474 bp · TkA02G609860|TK1151|cDNA

ATGCAAACTCATCTTGATAAAGAATCAAAGAAGAAATTTTTTGCTGGAGATGAAGCAGCGGGGAAGCAGTTTTGTACCGAGAAGGCAAGGGAAGCATATGAAGCATACTCTCGAGCCTTGCTTGAGAAGTATGGGGATGATTTACGTGATCACGCAATTGATGATGTTGAACTTTGGAAGAAAACCCAAAGGGAGATAAGTAAAGGTTTGAAGACCAGTTACATGTATGGGATTGGATCCTCAGATACGGAGTATGTGGT...

CDS

Download CDS FASTA

474 bp · TkA02G609860|TK1151|CDS

ATGCAAACTCATCTTGATAAAGAATCAAAGAAGAAATTTTTTGCTGGAGATGAAGCAGCGGGGAAGCAGTTTTGTACCGAGAAGGCAAGGGAAGCATATGAAGCATACTCTCGAGCCTTGCTTGAGAAGTATGGGGATGATTTACGTGATCACGCAATTGATGATGTTGAACTTTGGAAGAAAACCCAAAGGGAGATAAGTAAAGGTTTGAAGACCAGTTACATGTATGGGATTGGATCCTCAGATACGGAGTATGTGGT...

Protein

Download Protein FASTA

157 aa · TkA02G609860|TK1151|PROTEIN

MQTHLDKESKKKFFAGDEAAGKQFCTEKAREAYEAYSRALLEKYGDDLRDHAIDDVELWKKTQREISKGLKTSYMYGIGSSDTEYVVTGKSSAASCSSSSCESQHEVSELRIKLDTVEKDKLVMQEKLDNTERNAIEMQEKLENTDRNALEMQKKKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G609860`
TK1151 ID	TkA02G609860
OH-1004 ID	LXL04_035122
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	84.800
Protein coverage (%)	TK1151 79.618 / OH-1004 19.640 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G609860`
Location	Chr02:157314884-157315503 (+)
Description	Similar to CIPK2: CBL-interacting protein kinase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035122` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007165 signal transduction Biological Process GO:0009737 response to abscisic acid Biological Process GO:0005634 nucleus Cellular Component GO:0004674 protein serine/threonine kinase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference	ath:AT5G45820 dosa:Os01g0206700 dosa:Os03g0339900 dosa:Os05g0332300 dosa:Os07g0678600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.908

Rank 1 · TkA02G609860 · TK1151

Cytoplasm0.197

Rank 2 · TkA02G609860 · TK1151

Mitochondrion0.021

Rank 3 · TkA02G609860 · TK1151

Cell membrane0.015

Rank 4 · TkA02G609860 · TK1151

Extracellular0.012

Rank 5 · TkA02G609860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04201TPD5228-46 aa

PF24696UGSC37-101 aa

PF04201TPD5252-74 aa

PF26022CC_Liprin_beta97-143 aa

PF24627PUMA_CC103-121 aa

PF04201TPD52103-150 aa

PF24627PUMA_CC124-154 aa

PF24696UGSC128-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G609860	`PF04201`	TPD52	28	46	4.8	8.2
TkA02G609860	`PF24696`	UGSC	37	101	0.081	13.8
TkA02G609860	`PF04201`	TPD52	52	74	4.8	8.2
TkA02G609860	`PF26022`	CC_Liprin_beta	97	143	7.9e-05	23.6
TkA02G609860	`PF24627`	PUMA_CC	103	121	0.025	15.3
TkA02G609860	`PF04201`	TPD52	103	150	4.8	8.2
TkA02G609860	`PF24627`	PUMA_CC	124	154	0.025	15.3
TkA02G609860	`PF24696`	UGSC	128	144	0.081	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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