LXL04_035122 | RubberDandelionOmics

Gene overview

LXL04_035122

Reference: OH-1004 Chr: Chr08 Coordinates: 14988614-14995261 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1836 bp · LXL04_035122|LXL04_035122|OH1004|cDNA

ATGCAAACTCATCTTGATAAAGAATCAAAGAAGAATTTTTTTGCTGGTGACGAAGCAGCGGGGAAGCAGTTTTGTACCGAGAAGACAAGGGAAGCATATGAAGCATACTCTCGAGCCTTGGTTGAGAAGTATGGGGATGATTTACGTGATCATGCAATTGATCATGTTGAACTTTGGAAGATAAGTAAATGTTCGAAGACCAGTTACATATATGGGATTGGATCCTCAGATTTGGAGTATGTGGTCACGGGGAAATCATC...

CDS

Download CDS FASTA

1836 bp · LXL04_035122|LXL04_035122|OH1004|CDS

ATGCAAACTCATCTTGATAAAGAATCAAAGAAGAATTTTTTTGCTGGTGACGAAGCAGCGGGGAAGCAGTTTTGTACCGAGAAGACAAGGGAAGCATATGAAGCATACTCTCGAGCCTTGGTTGAGAAGTATGGGGATGATTTACGTGATCATGCAATTGATCATGTTGAACTTTGGAAGATAAGTAAATGTTCGAAGACCAGTTACATATATGGGATTGGATCCTCAGATTTGGAGTATGTGGTCACGGGGAAATCATC...

Protein

Download Protein FASTA

611 aa · LXL04_035122|LXL04_035122|OH1004|PROTEIN

MQTHLDKESKKNFFAGDEAAGKQFCTEKTREAYEAYSRALVEKYGDDLRDHAIDHVELWKISKCSKTSYIYGIGSSDLEYVVTGKSSTASCSSSSCESQHEVNELRIKLDTVEKDILLIRAVNEPNGHERRLVHVCSFNFKRYPVLLVAIYATILASEFLLRREVNINTSLLKTNMGNILMQKYEFGKMLGQGNFAKVYHGRDLKSGQSIAIKVIDKEKVLKVGLIDQTKREISVMKTVKHPNIIQLYEVMATKTKIYFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035122`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035122

Location Chr08:14988614-14995261 (+)

Description Similar to CIPK2: CBL-interacting protein kinase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45820`	CIPK serine-threonine protein kinases interact with CBL proteins.	Constitutive activation and transgenic evaluation of the function of an arabidopsis PKS protein kinase.2002 · DOI: 10.1074/jbc.m205504200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0678600`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os05g0332300`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os01g0206700`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os03g0339900`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035122 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005634 nucleus Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G45820

dosa:Os01g0206700

dosa:Os03g0339900

dosa:Os05g0332300

dosa:Os07g0678600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.545

Rank 1 · LXL04_035122 · OH-1004

Nucleus0.445

Rank 2 · LXL04_035122 · OH-1004

Cell membrane0.107

Rank 3 · LXL04_035122 · OH-1004

Endoplasmic reticulum0.057

Rank 4 · LXL04_035122 · OH-1004

Mitochondrion0.036

Rank 5 · LXL04_035122 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase184-438 aa

PF07714.24PK_Tyr_Ser-Thr185-434 aa

PF03109.23ABC1233-329 aa

PF14531.13Kinase-like272-387 aa

PF03822.21NAF485-540 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035122	`PF00069.32`	Pkinase	184	438	2.2e-75	254.2
LXL04_035122	`PF07714.24`	PK_Tyr_Ser-Thr	185	434	1.2e-37	130.4
LXL04_035122	`PF03109.23`	ABC1	233	329	2.4e-06	27.6
LXL04_035122	`PF14531.13`	Kinase-like	272	387	1.1e-06	28.9
LXL04_035122	`PF03822.21`	NAF	485	540	1.2e-19	70.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ54`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 20	58.503%	Swiss-Prot	strong database homology
`Q7X996`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 2	62.069%	Swiss-Prot	strong database homology
`Q5W736`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 18	61.187%	Swiss-Prot	strong database homology
`Q9LWM4`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 5	58.257%	Swiss-Prot	strong database homology
`Q10LQ2`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 10	57.684%	Swiss-Prot	strong database homology

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