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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G609290
Reference: TK1151 Chr: Chr02 Coordinates: 157147285-157150791 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2249 bp · TkA02G609290|TK1151|cDNA

TTCATCCATAAACTGATGTCAAATATCTTTCTACCACTCAAAGTTCGCCACGACGACCCTCCACTAGATTATTCTGCTACAACTCCTTCCACGTCTTCCACCACCATCACCACCCTCCGATCTCATTCTTCCCATTCATCTCCGCCGTCGACTCGTACTTGTGGCCACCATAGTTTCTCGTAAACTCTTCGATTCTTTTGTTATTTCAGTATCAGAAAATCCTGTACAACGATTATTTCTAATTTTTGATCAAACTCTCT...

CDS

Download CDS FASTA

1548 bp · TkA02G609290|TK1151|CDS

ATGGGAGTTGTGACTGTATCCAGCTCAGCTGGAAGGACCCCACTTGGATTAAGTGCAAGATTTTCTACTCCTCAATCTCCATTCAAAAGAAAGTCAATATTAGCATTCAAAACAGATAAAACCAAGAACACAGCTTTAGTTTCATCCAAGGAATCTGCAAATTTATCAATCGATACATCCAAAGAAACCCCAAAGAGACTGAGACGGAGTAAAAAGGCTTCAGAAAGAGTACAAGCTTTGTCTACTGTCGAAGGTCCTTC...

Protein

Download Protein FASTA

515 aa · TkA02G609290|TK1151|PROTEIN

MGVVTVSSSAGRTPLGLSARFSTPQSPFKRKSILAFKTDKTKNTALVSSKESANLSIDTSKETPKRLRRSKKASERVQALSTVEGPSCSLDLDYNEAAAELDRLYKLSPTTIDPDTHDHDDNQVKKGRRGKKKISDTNKKPKSTTVVRGHHKKVQRLTLEKRIHLKNEKDSTLVTSSLKRKQGKLNEDDKINRLVKDYTASTDLGSLDWKKMKIPPVLPSSEHTRLFKLLQTMKSILGVKEDLQKALEREPTDGELAEAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G609290
TK1151 IDTkA02G609290
OH-1004 IDLXL04_027684
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)31.700
Protein coverage (%)TK1151 57.864 / OH-1004 51.031
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G609290
LocationChr02:157147285-157150791 (+)
DescriptionSimilar to sigA: RNA polymerase sigma factor SigA (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g24120 Essential protein.
AtSig5 is an essential nucleus-encoded Arabidopsis sigma-like factor.2003 · DOI: 10.1104/pp.102.017913
Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.2004 · DOI: 10.1073/pnas.0308362101
Light induction of Arabidopsis SIG1 and SIG5 transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters.2008 · DOI: 10.1111/j.1365-313x.2008.03567.x
ANK6, a mitochondrial ankyrin repeat protein, is required for male-female gamete recognition in Arabidopsis thaliana.2010 · DOI: 10.1073/pnas.1015911107

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027684 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006352 DNA-templated transcription initiation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0016987 sigma factor activity Molecular Function
KEGG gene cross-reference
ana:all5263
msb:LJ00_13680
msg:MSMEI_2684
msm:MSMEG_2752
syf:Synpcc7942_0649
syf:Synpcc7942_0672
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.729
Rank 1 · TkA02G609290 · TK1151
Mitochondrion0.193
Rank 2 · TkA02G609290 · TK1151
Nucleus0.058
Rank 3 · TkA02G609290 · TK1151
Cytoplasm0.023
Rank 4 · TkA02G609290 · TK1151
Cell membrane0.009
Rank 5 · TkA02G609290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04539Sigma70_r363-86 aa
PF08281Sigma70_r4_291-102 aa
PF04539Sigma70_r3235-270 aa
PF13518HTH_28244-269 aa
PF08281Sigma70_r4_2255-270 aa
PF13443HTH_26256-285 aa
PF04967HTH_10263-277 aa
PF04542Sigma70_r2281-347 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G609290PF04539Sigma70_r363861.8e-2073.5
TkA02G609290PF08281Sigma70_r4_2911021.59.2
TkA02G609290PF04539Sigma70_r32352701.8e-2073.5
TkA02G609290PF13518HTH_282442690.1313.1
TkA02G609290PF08281Sigma70_r4_22552701.59.2
TkA02G609290PF13443HTH_262562850.2212.5
TkA02G609290PF04967HTH_102632770.2511.9
TkA02G609290PF04542Sigma70_r22813473.1e-1143.6
TkA02G609290PF08281Sigma70_r4_23623741.59.2
TkA02G609290PF04539Sigma70_r33664341.8e-2073.5
TkA02G609290PF04967HTH_103703990.2511.9
TkA02G609290PF04545Sigma70_r43853973.5e-1556.0
TkA02G609290PF00196GerE3853940.007316.6
TkA02G609290PF13518HTH_283853990.1313.1
TkA02G609290PF08281Sigma70_r4_23853961.59.2
TkA02G609290PF13443HTH_263874080.2212.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZNX9Arabidopsis thalianasp|Q9ZNX9|SIGE_ARATH RNA polymerase sigma factor sigE, chloroplastic/mitochondrial57.300%Swiss-ProtHigh

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