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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G606210
Reference: TK1151 Chr: Chr02 Coordinates: 156391146-156395048 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3453 bp · TkA02G606210|TK1151|cDNA

ATGGTGTTCAAGTTTCTTCCCCTCTCATGCATATTACTTGGCTTCTTCTTCCTCACTAATGCCGCCATTATCGATCAAAACCCAGAAACAGAGAGCTTGCTTTTTTTCAAGAGCTCGCTTTTGAACCCTAATACACTCTCCACCTGGAACCTCACTGCCCCACATTGTCAATGGGAAGGTGTTACTTGCCAAAACGAACGAGTTACTTCACTCGTTCTTTCAACTCACTCACTCAAAGGCCGACTCCATATTTCTCTTTT...

CDS

Download CDS FASTA

3453 bp · TkA02G606210|TK1151|CDS

ATGGTGTTCAAGTTTCTTCCCCTCTCATGCATATTACTTGGCTTCTTCTTCCTCACTAATGCCGCCATTATCGATCAAAACCCAGAAACAGAGAGCTTGCTTTTTTTCAAGAGCTCGCTTTTGAACCCTAATACACTCTCCACCTGGAACCTCACTGCCCCACATTGTCAATGGGAAGGTGTTACTTGCCAAAACGAACGAGTTACTTCACTCGTTCTTTCAACTCACTCACTCAAAGGCCGACTCCATATTTCTCTTTT...

Protein

Download Protein FASTA

1150 aa · TkA02G606210|TK1151|PROTEIN

MVFKFLPLSCILLGFFFLTNAAIIDQNPETESLLFFKSSLLNPNTLSTWNLTAPHCQWEGVTCQNERVTSLVLSTHSLKGRLHISLFSLSNLVVLDLSSNLFSGELPREISQLLRLQVLKLGDNQFSGGLPSELGDLIQLQTLELGPNFFSGVIPADIGRLSNLESLDLSSNSFTGIIPPEIKNLKKLRSLGLGNNFLSGSLSPSLLTNLHNLIFLDVANNTLSGEIASEIGTLSNLTDLYLGINRFSGLLPPEIGNLEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G606210
TK1151 IDTkA02G606210
OH-1004 IDLXL04_011873
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)82.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G606210
LocationChr02:156391146-156395048 (-)
DescriptionSimilar to EMS1: Leucine-rich repeat receptor protein kinase EMS1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g07280 Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0917500 Receptor-like kinase that plays important roles in restricting the number of cells entering into male and female sporogenesis.
The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice.2003 · DOI: 10.1105/tpc.012401
Os01g0718300 Receptor kinase involved in brassinosteroid (BR) signal transduction.
Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint.2000 · DOI: 10.1105/tpc.12.9.1591
The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice.2006 · DOI: 10.1104/pp.105.072330
OsBRI1 Activates BR Signaling by Preventing Binding between the TPR and Kinase Domains of OsBSK3 via Phosphorylation.2016 · DOI: 10.1104/pp.15.01668
OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.2016 · DOI: 10.1016/j.devcel.2016.06.011
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011873 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009554 megasporogenesis Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0009611 response to wounding Biological Process
GO:0010234 anther wall tapetum cell fate specification Biological Process
GO:0042659 regulation of cell fate specification Biological Process
GO:0045184 establishment of protein localization Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0051302 regulation of cell division Biological Process
GO:0055075 potassium ion homeostasis Biological Process
GO:0090708 specification of plant organ axis polarity Biological Process
GO:0160073 Casparian strip assembly Biological Process
KEGG gene cross-reference
ath:AT4G20140
ath:AT5G07280
dosa:Os01g0917500
dosa:Os02g0194400
osa:4324355
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.835
Rank 1 · TkA02G606210 · TK1151
Endoplasmic reticulum0.090
Rank 2 · TkA02G606210 · TK1151
Cytoplasm0.066
Rank 3 · TkA02G606210 · TK1151
Nucleus0.049
Rank 4 · TkA02G606210 · TK1151
Lysosome / Vacuole0.031
Rank 5 · TkA02G606210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_227-63 aa
PF25013LRR_Zer-165-100 aa
PF13855LRR_867-126 aa
PF29252LRR_NLRC467-118 aa
PF24758LRR_At5g5637068-126 aa
PF12799LRR_471-100 aa
PF23211LRR_LRWD182-148 aa
PF29247LRR_MHP1-HER1-GIP382-100 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G606210PF08263LRRNT_227636.7e-0936.6
TkA02G606210PF25013LRR_Zer-1651000.001419.5
TkA02G606210PF13855LRR_8671269.8e-50166.9
TkA02G606210PF29252LRR_NLRC4671180.1312.2
TkA02G606210PF24758LRR_At5g56370681265.7e-0730.1
TkA02G606210PF12799LRR_4711002.2e-36123.7
TkA02G606210PF23211LRR_LRWD1821483.38.1
TkA02G606210PF29247LRR_MHP1-HER1-GIP3821004.67.0
TkA02G606210PF23598LRR_14862143.5e-37128.7
TkA02G606210PF00560LRR_1911131e-61192.1
TkA02G606210PF24141LRR_ComC921791.6e-1041.9
TkA02G606210PF04754Transposase_31971260.1312.6
TkA02G606210PF29252LRR_NLRC41111430.1312.2
TkA02G606210PF00560LRR_11151371e-61192.1
TkA02G606210PF12799LRR_41151462.2e-36123.7
TkA02G606210PF00560LRR_11391611e-61192.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYN8Arabidopsis thalianasp|Q9LYN8|EMS1_ARATH Leucine-rich repeat receptor protein kinase EMS163.500%Swiss-ProtLow
Q8RZV7Oryza sativa subsp. japonicasp|Q8RZV7|MSP1_ORYSJ Leucine-rich repeat receptor protein kinase MSP160.200%Swiss-ProtLow
Q942F3Oryza sativa subsp. japonicasp|Q942F3|BRI1_ORYSJ Brassinosteroid LRR receptor kinase BRI149.900%Swiss-ProtLow

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