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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_011873
Reference: OH-1004 Chr: Chr03 Coordinates: 2055073-2058975 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3903 bp · LXL04_011873|LXL04_011873|OH1004|cDNA

ATGGTGTTCAAGTTTCTTCCCCTCTCATGCATATTACTtggcttcttcttcctcactaATGCCGCCATTATCGATCAAAACCCAGAAACAGAGAGCTTGCTTTTTTTCAAGAGCTCGCTTTTGAACCCTAATACACTCTCCACCTGGAACCTCACTGCCCCACATTGTCAATGGGAAGGTGTTACTTGCCAAAACGAACGAGTTACTTCACTCGTTCTTTCAACTCACTCACTCAAAGGCCGACTCCATATTTCTCTTTT...

CDS

Download CDS FASTA

3903 bp · LXL04_011873|LXL04_011873|OH1004|CDS

ATGGTGTTCAAGTTTCTTCCCCTCTCATGCATATTACTTGGCTTCTTCTTCCTCACTAATGCCGCCATTATCGATCAAAACCCAGAAACAGAGAGCTTGCTTTTTTTCAAGAGCTCGCTTTTGAACCCTAATACACTCTCCACCTGGAACCTCACTGCCCCACATTGTCAATGGGAAGGTGTTACTTGCCAAAACGAACGAGTTACTTCACTCGTTCTTTCAACTCACTCACTCAAAGGCCGACTCCATATTTCTCTTTT...

Protein

Download Protein FASTA

1300 aa · LXL04_011873|LXL04_011873|OH1004|PROTEIN

MVFKFLPLSCILLGFFFLTNAAIIDQNPETESLLFFKSSLLNPNTLSTWNLTAPHCQWEGVTCQNERVTSLVLSTHSLKGRLHISLFSLSNLVVLDLSSNLFSGELPREISQLLRLQVLKLGDNQFSGGLPSELGDLIQLQTLELGPNFFSGVIPADIGRLSNLESLDLSSNSFTGIIPPEIKNLKKLRSLGLGNNFLSGSLSPSLLTNLHNLIFLDVANNTLSGEIPSEIGTLSNLTDLYLGINRFSGLLPPEIGNLEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_011873
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_011873
LocationChr03:2055073-2058975 (+)
DescriptionSimilar to EMS1: Leucine-rich repeat receptor protein kinase EMS1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g07280 Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. No verified direct reference in this release
At4g20140 Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
GASSHO1 and GASSHO2 encoding a putative leucine-rich repeat transmembrane-type receptor kinase are essential for the normal development of the epidermal surface in Arabidopsis embryos.2008 · DOI: 10.1111/j.1365-313x.2007.03395.x
The receptor-like kinases GSO1 and GSO2 together regulate root growth in Arabidopsis through control of cell division and cell fate specification.2014 · DOI: 10.1002/dvdy.24066
A peptide hormone required for Casparian strip diffusion barrier formation in Arabidopsis roots.2017 · DOI: 10.1126/science.aai9057
At2g01950 Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells.
VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation.2009 · DOI: 10.1111/j.1365-313x.2008.03742.x

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0917500 Receptor-like kinase that plays important roles in restricting the number of cells entering into male and female sporogenesis.
The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice.2003 · DOI: 10.1105/tpc.012401
Os02g0194400 Receptor-like kinase that may play a role male and female sporogenesis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011873 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009554 megasporogenesis Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0009611 response to wounding Biological Process
GO:0010234 anther wall tapetum cell fate specification Biological Process
GO:0042659 regulation of cell fate specification Biological Process
GO:0045184 establishment of protein localization Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0051302 regulation of cell division Biological Process
GO:0055075 potassium ion homeostasis Biological Process
GO:0090708 specification of plant organ axis polarity Biological Process
GO:0160073 Casparian strip assembly Biological Process
KEGG gene cross-reference
ath:AT4G20140
ath:AT5G07280
dosa:Os01g0917500
dosa:Os02g0194400
osa:4324355
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.841
Rank 1 · LXL04_011873 · OH-1004
Endoplasmic reticulum0.093
Rank 2 · LXL04_011873 · OH-1004
Cytoplasm0.066
Rank 3 · LXL04_011873 · OH-1004
Nucleus0.048
Rank 4 · LXL04_011873 · OH-1004
Lysosome / Vacuole0.032
Rank 5 · LXL04_011873 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_227-63 aa
PF23598.2LRR_1486-214 aa
PF13855.13LRR_8139-196 aa
PF00560.40LRR_1163-185 aa
PF12799.14LRR_4163-199 aa
PF23598.2LRR_14180-374 aa
PF13855.13LRR_8276-317 aa
PF13855.13LRR_8380-438 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_011873PF08263.18LRRNT_227637.7e-0936.4
LXL04_011873PF23598.2LRR_14862142e-44152.5
LXL04_011873PF13855.13LRR_81391969.9e-63208.5
LXL04_011873PF00560.40LRR_11631851.3e-75233.5
LXL04_011873PF12799.14LRR_41631991.3e-46156.2
LXL04_011873PF23598.2LRR_141803742e-44152.5
LXL04_011873PF13855.13LRR_82763179.9e-63208.5
LXL04_011873PF13855.13LRR_83804389.9e-63208.5
LXL04_011873PF13855.13LRR_84284859.9e-63208.5
LXL04_011873PF12799.14LRR_45235561.3e-46156.2
LXL04_011873PF13855.13LRR_85466059.9e-63208.5
LXL04_011873PF12799.14LRR_45706101.3e-46156.2
LXL04_011873PF13855.13LRR_86597149.9e-63208.5
LXL04_011873PF12799.14LRR_46596901.3e-46156.2
LXL04_011873PF13855.13LRR_86787389.9e-63208.5
LXL04_011873PF12799.14LRR_47037411.3e-46156.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYN8Arabidopsis thalianaLeucine-rich repeat receptor protein kinase EMS155.937%Swiss-Protstrong database homology
C0LGQ5Arabidopsis thalianaLRR receptor-like serine/threonine-protein kinase GSO136.088%Swiss-Protmoderate database homology
Q9ZPS9Arabidopsis thalianaSerine/threonine-protein kinase BRI1-like 237.830%Swiss-Protmoderate database homology
Q8RZV7Oryza sativa subsp. japonicaLeucine-rich repeat receptor protein kinase MSP142.072%Swiss-Protmoderate database homology
Q7F8Q9Oryza sativa subsp. japonicaLeucine-rich repeat receptor protein kinase MSL139.846%Swiss-Protmoderate database homology

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