TkA02G604780 | RubberDandelionOmics

Gene overview

TkA02G604780

Reference: TK1151 Chr: Chr02 Coordinates: 155964674-155965501 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

753 bp · TkA02G604780|TK1151|cDNA

ATGGGTTGTGCTTTTTCAGTCGACTGTAGCTGTATCGGTGATATATGTTTACCTAGAGATCCTAAAGTAAAAGAAACCGACAATGTCGGTACATCTGAACTCGCCGTGTTCTCACCTAAATCTTCATTCAAGGAAGACGATGGAGACGCAAATCAGAATCCAGAAGCAGGAAACTACAGATTACAGTACTCGTATCTATCTCAAAGAGGATACTATCCCGACGCCCTTGATAAAGCCAACCAAGTTAGCTTCTGCATCCA...

CDS

Download CDS FASTA

753 bp · TkA02G604780|TK1151|CDS

ATGGGTTGTGCTTTTTCAGTCGACTGTAGCTGTATCGGTGATATATGTTTACCTAGAGATCCTAAAGTAAAAGAAACCGACAATGTCGGTACATCTGAACTCGCCGTGTTCTCACCTAAATCTTCATTCAAGGAAGACGATGGAGACGCAAATCAGAATCCAGAAGCAGGAAACTACAGATTACAGTACTCGTATCTATCTCAAAGAGGATACTATCCCGACGCCCTTGATAAAGCCAACCAAGTTAGCTTCTGCATCCA...

Protein

Download Protein FASTA

250 aa · TkA02G604780|TK1151|PROTEIN

MGCAFSVDCSCIGDICLPRDPKVKETDNVGTSELAVFSPKSSFKEDDGDANQNPEAGNYRLQYSYLSQRGYYPDALDKANQVSFCIHTPFGSNPNDHFFGVFDGHGEYGAQCSQFVKQKLCENLLRNSRFHVDLVDACHAAFLTTNSQLHADNNVDDSMSGTTAITVLVLGKTIYVANSGDSRAVIAEKRGTEIVAVDLSIDQTPYREDELEKVKLCGARVLTPDQIEGFKNPDVQCWEHEGNNRLIQPL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G604780`
TK1151 ID	TkA02G604780
OH-1004 ID	LXL04_011910
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.900
Protein coverage (%)	TK1151 100.000 / OH-1004 95.156 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G604780

Location Chr02:155964674-155965501 (+)

Description Similar to At2g20050/At2g20040: Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q9SL76`	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	No verified direct reference in this release
`At3g06270`	Probable protein phosphatase 2C 35.	No verified direct reference in this release
`At3g51470`	Probable protein phosphatase 2C 47.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0646100`	Probable protein phosphatase 2C 65.	No verified direct reference in this release
`Os04g0659500`	Probable protein phosphatase 2C 45.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011910 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006470 protein dephosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005952 cAMP-dependent protein kinase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004691 cAMP-dependent protein kinase activity Molecular Function

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT2G20050

ath:AT3G06270

ath:AT4G31750

dosa:Os06g0526700

dosa:Os07g0646100

osa:4341187

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.307

Rank 1 · TkA02G604780 · TK1151

Cell membrane0.248

Rank 2 · TkA02G604780 · TK1151

Nucleus0.225

Rank 3 · TkA02G604780 · TK1151

Endoplasmic reticulum0.143

Rank 4 · TkA02G604780 · TK1151

Lysosome / Vacuole0.136

Rank 5 · TkA02G604780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C91-219 aa

PF13672PP2C_2105-191 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G604780	`PF00481`	PP2C	91	219	3.1e-21	76.9
TkA02G604780	`PF13672`	PP2C_2	105	191	0.033	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SL76`	Arabidopsis thaliana	sp\|Q9SL76\|P2C19_ARATH Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein	75.100%	Swiss-Prot	High
`Q7XJ53`	Arabidopsis thaliana	sp\|Q7XJ53\|P2C35_ARATH Probable protein phosphatase 2C 35	58.700%	Swiss-Prot	High
`Q9SD02`	Arabidopsis thaliana	sp\|Q9SD02\|P2C47_ARATH Probable protein phosphatase 2C 47	30.600%	Swiss-Prot	Medium
`Q8H2T0`	Oryza sativa subsp. japonica	sp\|Q8H2T0\|P2C65_ORYSJ Probable protein phosphatase 2C 65	41.300%	Swiss-Prot	Medium
`Q7XR06`	Oryza sativa subsp. japonica	sp\|Q7XR06\|P2C45_ORYSJ Probable protein phosphatase 2C 45	38.700%	Swiss-Prot	Low

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