TkA02G604740 | RubberDandelionOmics

Gene overview

TkA02G604740

Reference: TK1151 Chr: Chr02 Coordinates: 155950243-155952012 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1689 bp · TkA02G604740|TK1151|cDNA

ATGTCGTCTGGGTTTTCCGGCAGTTTTCCAGATTTCTTCAATTCGAACGGAGGTGGTGTAAACAACTTCGCCGGAAGATCTATGTCCATGATGAATGTGAACAGTAACGTTAACAGGAGTAGTTACAGGTCTCCGTTAGCTGGAATACTCTCCGACACCTCGTCGCCAGTAGTTGGATCACGATCTGACTTCAACGGAAAACGATCCTTAGCGGAACTCCAGCAGCAACAAGCTGCGATTTACTTGAGAAACGTGAGACC...

CDS

Download CDS FASTA

1689 bp · TkA02G604740|TK1151|CDS

ATGTCGTCTGGGTTTTCCGGCAGTTTTCCAGATTTCTTCAATTCGAACGGAGGTGGTGTAAACAACTTCGCCGGAAGATCTATGTCCATGATGAATGTGAACAGTAACGTTAACAGGAGTAGTTACAGGTCTCCGTTAGCTGGAATACTCTCCGACACCTCGTCGCCAGTAGTTGGATCACGATCTGACTTCAACGGAAAACGATCCTTAGCGGAACTCCAGCAGCAACAAGCTGCGATTTACTTGAGAAACGTGAGACC...

Protein

Download Protein FASTA

562 aa · TkA02G604740|TK1151|PROTEIN

MSSGFSGSFPDFFNSNGGGVNNFAGRSMSMMNVNSNVNRSSYRSPLAGILSDTSSPVVGSRSDFNGKRSLAELQQQQAAIYLRNVRPRGALSNYQVNDYSPTITKQASQKQDMDTKMLNRLQELEKELLLDDEEEENDAVSVVTDTAEWSETIQRLLNPENNTVSPSPTTSSTSSSASSSASVSPKQFVSDAAEAITDGKTEIAAELITHIDKHFNARGSPEQRLGFYMASALRSRVSVNSTPSPATELYRKEHILSTQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G604740`
TK1151 ID	TkA02G604740
OH-1004 ID	LXL04_021645
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	56.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G604740

Location Chr02:155950243-155952012 (-)

Description Similar to SCL8: Scarecrow-like protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g52510`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At1g21450`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At5g48150`	Probable transcription factor involved in phytochrome A (phyA) signal transduction.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0583600`	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane- associated high-affinity chitin-binding protein.	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor.2003 · DOI: 10.1016/s0167-4781(02)00626-7
`Os07g0545800`	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane- associated high-affinity chitin-binding protein.	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor.2003 · DOI: 10.1016/s0167-4781(02)00626-7

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021645 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G21450

ath:AT5G48150

ath:AT5G52510

dosa:Os07g0545800

dosa:Os07g0583600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.874

Rank 1 · TkA02G604740 · TK1151

Cytoplasm0.171

Rank 2 · TkA02G604740 · TK1151

Cell membrane0.037

Rank 3 · TkA02G604740 · TK1151

Endoplasmic reticulum0.025

Rank 4 · TkA02G604740 · TK1151

Plastid0.022

Rank 5 · TkA02G604740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28834KOKOPELLI32-187 aa

PF27961CSNKA2IP113-195 aa

PF24336DUF7504128-238 aa

PF03514GRAS189-561 aa

PF24336DUF7504320-359 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G604740	`PF28834`	KOKOPELLI	32	187	0.45	10.7
TkA02G604740	`PF27961`	CSNKA2IP	113	195	0.011	16.0
TkA02G604740	`PF24336`	DUF7504	128	238	0.01	17.0
TkA02G604740	`PF03514`	GRAS	189	561	2.5e-95	320.3
TkA02G604740	`PF24336`	DUF7504	320	359	0.01	17.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FYR7`	Arabidopsis thaliana	sp\|Q9FYR7\|SCL8_ARATH Scarecrow-like protein 8	48.300%	Swiss-Prot	Medium
`Q9SDQ3`	Arabidopsis thaliana	sp\|Q9SDQ3\|SCL1_ARATH Scarecrow-like protein 1	34.400%	Swiss-Prot	Medium
`Q9LDL7`	Arabidopsis thaliana	sp\|Q9LDL7\|PAT1_ARATH Scarecrow-like transcription factor PAT1	37.000%	Swiss-Prot	Medium
`Q8GVE1`	Oryza sativa subsp. japonica	sp\|Q8GVE1\|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2	37.700%	Swiss-Prot	Medium
`Q69VG1`	Oryza sativa subsp. japonica	sp\|Q69VG1\|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1	35.700%	Swiss-Prot	Medium

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