TkA02G600090 | RubberDandelionOmics

Gene overview

TkA02G600090

Reference: TK1151 Chr: Chr02 Coordinates: 154730251-154731078 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · TkA02G600090|TK1151|cDNA

GTATTTCTTCTTCATCGTAATCAACCGGTTTTCGATCGAACTGCATCCATGATGCAAGTAAAGAATCACAGCCTATTATTAGCCCAAAGGTGAAGAAATCCTGGCTACAACGGTACAATCTATTTTCAAGGTACGACGAAGGTATCAAAATGGACGAAGAAGGATAGTTCTCCGTCACGCCGGAGGAAATCGCAGTCCGCCACGCCCAGCGGAGCATTGCCGGTGGAGTCGTAATCGATTGCTTTGCTGGTATGGGCGGC...

CDS

Download CDS FASTA

372 bp · TkA02G600090|TK1151|CDS

ATGGGCGGCAATTCCATTCAATTTGCTGCACTGGGGTATCACGTTATTGTCGTTGATATCGATCCTTTAAAAGTTGAAATGGCATCAAACAATGCAAAGATCTACGGTGTGGACAATTACATTGATTTCATCGTGGGAGACTTTTTGCAACTAGCACCATCTCTAAAGGGTAATGTAGCATTTCTTTCACCACCATGGGGAGGTCCTTCTTACAAGATGACCCATAATTTTACACTCGACTTATTAAAGCCAGTAGACGG...

Protein

Download Protein FASTA

123 aa · TkA02G600090|TK1151|PROTEIN

MGGNSIQFAALGYHVIVVDIDPLKVEMASNNAKIYGVDNYIDFIVGDFLQLAPSLKGNVAFLSPPWGGPSYKMTHNFTLDLLKPVDGYTLFQVAQRITPNIIMFLPRNVDVCQVEQLSWLSLP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G600090`
TK1151 ID	TkA02G600090
OH-1004 ID	LXL04_038664
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 48.425 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G600090`
Location	Chr02:154730251-154731078 (+)
Description	Similar to Tgs1: Trimethylguanosine synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038664` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000387 spliceosomal snRNP assembly Biological Process GO:0001510 RNA methylation Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0008033 tRNA processing Biological Process GO:0017126 nucleologenesis Biological Process GO:0022613 ribonucleoprotein complex biogenesis Biological Process GO:0032210 regulation of telomere maintenance via telomerase Biological Process GO:0036261 7-methylguanosine cap hypermethylation Biological Process GO:0042308 negative regulation of protein import into nucleus Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0071333 cellular response to glucose stimulus Biological Process GO:0071398 cellular response to fatty acid Biological Process
KEGG gene cross-reference	hsa:96764 mmu:116940 rno:312947 sce:YPL157W spo:2542015 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.684

Rank 1 · TkA02G600090 · TK1151

Nucleus0.398

Rank 2 · TkA02G600090 · TK1151

Mitochondrion0.060

Rank 3 · TkA02G600090 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA02G600090 · TK1151

Lysosome / Vacuole0.046

Rank 5 · TkA02G600090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09445Methyltransf_152-117 aa

PF13649Methyltransf_252-52 aa

PF08241Methyltransf_113-53 aa

PF02475TRM5-TYW2_MTfase5-58 aa

PF13847Methyltransf_315-52 aa

PF03721UDPG_MGDP_dh_N5-34 aa

PF00107ADH_zinc_N5-43 aa

PF29244Methyltransf_ANTKMT6-53 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G600090	`PF09445`	Methyltransf_15	2	117	1.2e-32	113.5
TkA02G600090	`PF13649`	Methyltransf_25	2	52	0.0014	20.0
TkA02G600090	`PF08241`	Methyltransf_11	3	53	0.015	16.6
TkA02G600090	`PF02475`	TRM5-TYW2_MTfase	5	58	0.012	16.3
TkA02G600090	`PF13847`	Methyltransf_31	5	52	0.034	14.6
TkA02G600090	`PF03721`	UDPG_MGDP_dh_N	5	34	0.081	13.3
TkA02G600090	`PF00107`	ADH_zinc_N	5	43	0.21	12.3
TkA02G600090	`PF29244`	Methyltransf_ANTKMT	6	53	0.054	14.7
TkA02G600090	`PF01170`	UPF0020	13	67	0.0031	17.9
TkA02G600090	`PF13578`	Methyltransf_24	13	61	0.32	12.6
TkA02G600090	`PF01596`	Methyltransf_3	14	52	0.28	11.2
TkA02G600090	`PF02475`	TRM5-TYW2_MTfase	96	116	0.012	16.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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