TkA02G598400 | RubberDandelionOmics

Gene overview

TkA02G598400

Reference: TK1151 Chr: Chr02 Coordinates: 154284602-154296125 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2366 bp · TkA02G598400|TK1151|cDNA

GAAAAGTTAAGTAAAAAACACACAGATCCTGCTCTGATCCGATCTTTAGATAGTCGTATAGCTGTTCATGTAATTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACATCATTCATCATGCCATCTCGACTACCTCCGTCTCCGTCGCCATCCTCACAGCCACCGCCACCTGACCAGCACCATATCCGCCTTGGTCCTCCACTAGCGGTTGCTTTCTCTTTCCTCATAGCCCTAACCTTCTGCTTCCG...

CDS

Download CDS FASTA

2136 bp · TkA02G598400|TK1151|CDS

GAAAAGTTAAGTAAAAAACACACAGATCCTGCTCTGATCCGATCTTTAGATAGTCGTATAGCTGTTCATGTAATTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACATCATTCATCATGCCATCTCGACTACCTCCGTCTCCGTCGCCATCCTCACAGCCACCGCCACCTGACCAGCACCATATCCGCCTTGGTCCTCCACTAGCGGTTGCTTTCTCTTTCCTCATAGCCCTAACCTTCTGCTTCCG...

Protein

Download Protein FASTA

711 aa · TkA02G598400|TK1151|PROTEIN

EKLSKKHTDPALIRSLDSRIAVHVITLSLSLSLSLTHTHTSFIMPSRLPPSPSPSSQPPPPDQHHIRLGPPLAVAFSFLIALTFCFRKFTTRKRTAPSDSKPPHKFSYTALSRATSSFSVSNRLGQGGFGSVYRGTLINNQDVAVKVMDAGSLQGEREFQNELFFAGKIDSDRITAVVGFSSDRRRRRMVLVYELMTNGSLQDCLLHRKSPELKEWKKRLSVAIDVAKGIEYLHHYCDPPIIHGDIKPSNILLDHNFNAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G598400`
TK1151 ID	TkA02G598400
OH-1004 ID	LXL04_011989
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.700
Protein coverage (%)	TK1151 92.827 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G598400

Location Chr02:154284602-154296125 (+)

Description Similar to At4g25390: Receptor-like serine/threonine-protein kinase At4g25390

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25390`	Receptor-like serine/threonine-protein kinase At4g25390.	No verified direct reference in this release
`At2g45590`	Receptor-like serine/threonine-protein kinase At2g45590.	No verified direct reference in this release
`At1g80870`	Putative receptor-like protein kinase At1g80870.	No verified direct reference in this release
`At1g49270`	Proline-rich receptor-like protein kinase PERK7.	No verified direct reference in this release
`At3g24400`	Proline-rich receptor-like protein kinase PERK2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011989 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G49270

ath:AT1G80870

ath:AT2G45590

ath:AT4G25390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.650

Rank 1 · TkA02G598400 · TK1151

Nucleus0.251

Rank 2 · TkA02G598400 · TK1151

Cytoplasm0.198

Rank 3 · TkA02G598400 · TK1151

Endoplasmic reticulum0.060

Rank 4 · TkA02G598400 · TK1151

Golgi apparatus0.030

Rank 5 · TkA02G598400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase119-271 aa

PF07714PK_Tyr_Ser-Thr120-274 aa

PF03109ABC1125-149 aa

PF03109ABC1188-268 aa

PF06734UL97218-274 aa

PF00069Pkinase560-673 aa

PF07714PK_Tyr_Ser-Thr561-674 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G598400	`PF00069`	Pkinase	119	271	5.2e-36	125.1
TkA02G598400	`PF07714`	PK_Tyr_Ser-Thr	120	274	1.5e-35	123.5
TkA02G598400	`PF03109`	ABC1	125	149	9.4e-05	22.4
TkA02G598400	`PF03109`	ABC1	188	268	9.4e-05	22.4
TkA02G598400	`PF06734`	UL97	218	274	0.14	12.0
TkA02G598400	`PF00069`	Pkinase	560	673	5.2e-36	125.1
TkA02G598400	`PF07714`	PK_Tyr_Ser-Thr	561	674	1.5e-35	123.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STJ8`	Arabidopsis thaliana	sp\|Q9STJ8\|Y4539_ARATH Receptor-like serine/threonine-protein kinase At4g25390	56.000%	Swiss-Prot	High
`O64639`	Arabidopsis thaliana	sp\|O64639\|Y2559_ARATH Receptor-like serine/threonine-protein kinase At2g45590	50.100%	Swiss-Prot	High
`Q9SAH3`	Arabidopsis thaliana	sp\|Q9SAH3\|Y1887_ARATH Putative receptor-like protein kinase At1g80870	35.100%	Swiss-Prot	Medium
`Q9XI96`	Arabidopsis thaliana	sp\|Q9XI96\|PERK7_ARATH Proline-rich receptor-like protein kinase PERK7	47.100%	Swiss-Prot	Low
`Q9LK03`	Arabidopsis thaliana	sp\|Q9LK03\|PERK2_ARATH Proline-rich receptor-like protein kinase PERK2	46.500%	Swiss-Prot	Low

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