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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G586400
Reference: TK1151 Chr: Chr02 Coordinates: 151294145-151301562 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5366 bp · TkA02G586400|TK1151|cDNA

GGAAAAACGACCGGCACGTAACACGACATCAGTCCTCACCCAGCTTCGTTCGTAGTGGCTCTCCGTCGCGGTTACACCGCCCAATTAAGCCTATCAAATCGACGGAGCAAACTCTTCCACCTTATCAGAAGCGGCAACTGAGAGCTTTACTGATTCCTCAATTTTCTGCCAACTCCCCAGGTTCTTTCGGCCAAAAAACATAATCACGTCTCCTTTTTCTTCCAATCACTAATTTGAATCAATGTTGACAAGTTACGTAG...

CDS

Download CDS FASTA

2709 bp · TkA02G586400|TK1151|CDS

ATGGGTAGAAGAAAGCAGATTCAGCCTCGCAAGGCAGGAACCACCACTGTTGACAACAATGGTGTTTCTAAACAGGATTTTCACAATCCAGAAACATCCCCAGCTTCTGAAAACGATCTTTCTGGTCACAACAATCCAGTTTACATCAAAACTGATAGAAATAATTGGGTGTCAGAACAACATTATGACATCTCAGAAGTTCTTCTGACAAATCTGAATGTAAGAGAACCATTTTCTGATAGAAAATACGAGGAACAAGA...

Protein

Download Protein FASTA

902 aa · TkA02G586400|TK1151|PROTEIN

MGRRKQIQPRKAGTTTVDNNGVSKQDFHNPETSPASENDLSGHNNPVYIKTDRNNWVSEQHYDISEVLLTNLNVREPFSDRKYEEQDFINDERYNLRFQLNTIIKPIHFPVLPASDIHLEFLENQESADMEPHVMVTGNFDGPSEGVSGLVHLVSMKFLTLRPITKLTFSESLSSIRLRVEIQKCAFEDCESLFETTRQIWKKSMMNVMAWLRPEVSTSESRYGYKVPDDMDIDLEGNELRKGARFDVSGFYEAIKPSKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G586400
TK1151 IDTkA02G586400
OH-1004 IDLXL04_004619
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)28.600
Protein coverage (%)TK1151 54.878 / OH-1004 37.355
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G586400
LocationChr02:151294145-151301562 (-)
DescriptionSimilar to RAD5A: DNA repair protein RAD5A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g22750 Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway.
A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806
RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.078568
RAD5a and REV3 function in two alternative pathways of DNA-damage tolerance in Arabidopsis.2011 · DOI: 10.1016/j.dnarep.2011.04.009
AtRAD5A is a DNA translocase harboring a HIRAN domain which confers binding to branched DNA structures and is required for DNA repair in vivo.2016 · DOI: 10.1111/tpj.13283
At5g43530 Possesses intrinsic ATP-dependent nucleosome-remodeling activity.
A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004619 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006325 chromatin organization Biological Process
GO:0009294 DNA-mediated transformation Biological Process
GO:0019985 translesion synthesis Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0042275 error-free postreplication DNA repair Biological Process
GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process
GO:0071932 replication fork reversal Biological Process
GO:0005634 nucleus Cellular Component
GO:0005694 chromosome Cellular Component
KEGG gene cross-reference
afm:AFUA_5G12600
ath:AT5G22750
ath:AT5G43530
fgr:FGSG_02724
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.733
Rank 1 · TkA02G586400 · TK1151
Cytoplasm0.311
Rank 2 · TkA02G586400 · TK1151
Mitochondrion0.052
Rank 3 · TkA02G586400 · TK1151
Cell membrane0.033
Rank 4 · TkA02G586400 · TK1151
Endoplasmic reticulum0.025
Rank 5 · TkA02G586400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13424TPR_12187-203 aa
PF00176SNF2-rel_dom278-766 aa
PF31197PHD_JHD1309-318 aa
PF20826PHD_5397-432 aa
PF00628PHD401-438 aa
PF31197PHD_JHD1403-445 aa
PF20826PHD_5694-699 aa
PF28749YPL108W_C705-762 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G586400PF13424TPR_121872030.007817.1
TkA02G586400PF00176SNF2-rel_dom2787667.9e-66222.8
TkA02G586400PF31197PHD_JHD13093186.5e-0626.7
TkA02G586400PF20826PHD_53974320.1113.3
TkA02G586400PF00628PHD4014385.1e-0523.9
TkA02G586400PF31197PHD_JHD14034456.5e-0626.7
TkA02G586400PF20826PHD_56946990.1113.3
TkA02G586400PF28749YPL108W_C7057620.01715.8
TkA02G586400PF00515TPR_17087260.01715.6
TkA02G586400PF07719TPR_27087260.03914.8
TkA02G586400PF00628PHD7137225.1e-0523.9
TkA02G586400PF21325SHPRH_helical-1st7828628.5e-2587.5
TkA02G586400PF18768RNPP_C7868730.1712.0
TkA02G586400PF17874TPR_MalT7968410.0912.8
TkA02G586400PF13424TPR_128068360.007817.1
TkA02G586400PF00515TPR_18078380.01715.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNI6Arabidopsis thalianasp|Q9FNI6|SM3L2_ARATH DNA repair protein RAD5A29.600%Swiss-ProtLow
Q9FIY7Arabidopsis thalianasp|Q9FIY7|SM3L3_ARATH DNA repair protein RAD5B29.800%Swiss-ProtLow

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