Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3111 bp · LXL04_004619|LXL04_004619|OH1004|cDNA
ATGGCGAACAAAATCAGCGATGAACTGATCACAACGGTTCAGTCCATCGTAGGCCAAGATTATTCCAAGATGGATGTACTCAGAGCCCTTCACATGGCGAACAACGATGCCACAGCCGCAATTAACATTATTTTTGACACCCCAAGCTTCAAAAAATCGGAACCCCCAAAGACCCCAAAGGTCCCGAGTCGTACTGCAACTGTCACGACACAGGATGCGACTCGTAATGCAACTGTGAAAACACAAGCTGCTGTTAGCAG...
3111 bp · LXL04_004619|LXL04_004619|OH1004|CDS
ATGGCGAACAAAATCAGCGATGAACTGATCACAACGGTTCAGTCCATCGTAGGCCAAGATTATTCCAAGATGGATGTACTCAGAGCCCTTCACATGGCGAACAACGATGCCACAGCCGCAATTAACATTATTTTTGACACCCCAAGCTTCAAAAAATCGGAACCCCCAAAGACCCCAAAGGTCCCGAGTCGTACTGCAACTGTCACGACACAGGATGCGACTCGTAATGCAACTGTGAAAACACAAGCTGCTGTTAGCAG...
Protein
Download Protein FASTA1036 aa · LXL04_004619|LXL04_004619|OH1004|PROTEIN
MANKISDELITTVQSIVGQDYSKMDVLRALHMANNDATAAINIIFDTPSFKKSEPPKTPKVPSRTATVTTQDATRNATVKTQAAVSSSMTNNVSCSVDDEPCTSRSVEREVDKGNEVVNNLTGSSKWWFVGCCQVAGLSTCKGSKIKPGDQLNFTFPPEKRLSGPSPGKFGSGGRGRQPTACSEIVRFSTSASGEIGRIPNEWSRCLLPLVRDKKIQIQGFCKSAPDNLGLMDTINLSISVYINSSMLQKSHQTSVKVPT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004619 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004619 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:141662365-141666599 (+) | |||||||||
| Description | Similar to RAD5A: DNA repair protein RAD5A | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006325 chromatin organization Biological Process GO:0009294 DNA-mediated transformation Biological Process GO:0019985 translesion synthesis Biological Process GO:0036297 interstrand cross-link repair Biological Process GO:0042275 error-free postreplication DNA repair Biological Process GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process GO:0071932 replication fork reversal Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component | |||||||||
| KEGG gene cross-reference | afm:AFUA_5G12600 ath:AT5G22750 ath:AT5G43530 fgr:FGSG_02724 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24559.2UBA_RAD5A6-49 aaPF08797.17HIRAN130-238 aaPF00176.30SNF2-rel_dom368-748 aaPF00270.36DEAD437-622 aaPF13920.13zf-C3HC4_3799-846 aaPF13923.13zf-C3HC4_2800-840 aaPF13639.13zf-RING_2800-841 aaPF00097.32zf-C3HC4801-840 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004619 | PF24559.2 | UBA_RAD5A | 6 | 49 | 1.6e-24 | 85.8 |
| LXL04_004619 | PF08797.17 | HIRAN | 130 | 238 | 6.8e-16 | 58.6 |
| LXL04_004619 | PF00176.30 | SNF2-rel_dom | 368 | 748 | 6.8e-73 | 246.0 |
| LXL04_004619 | PF00270.36 | DEAD | 437 | 622 | 3.5e-07 | 30.8 |
| LXL04_004619 | PF13920.13 | zf-C3HC4_3 | 799 | 846 | 1.7e-08 | 34.9 |
| LXL04_004619 | PF13923.13 | zf-C3HC4_2 | 800 | 840 | 3.5e-08 | 33.8 |
| LXL04_004619 | PF13639.13 | zf-RING_2 | 800 | 841 | 2.1e-07 | 31.8 |
| LXL04_004619 | PF00097.32 | zf-C3HC4 | 801 | 840 | 1.1e-08 | 35.5 |
| LXL04_004619 | PF13445.13 | zf-RING_UBOX | 801 | 838 | 1.4e-08 | 35.3 |
| LXL04_004619 | PF14447.13 | Prok-RING_4 | 801 | 847 | 4e-06 | 27.3 |
| LXL04_004619 | PF15227.13 | zf-C3HC4_4 | 801 | 840 | 9.5e-06 | 26.3 |
| LXL04_004619 | PF00271.38 | Helicase_C | 872 | 983 | 4e-21 | 76.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.