Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_004619`
Query reference	OH1004
Location	Chr01:141662365-141666599 (+)
Description	Similar to RAD5A: DNA repair protein RAD5A (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_004619 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22750`	Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway.	A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806 RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.078568 RAD5a and REV3 function in two alternative pathways of DNA-damage tolerance in Arabidopsis.2011 · DOI: 10.1016/j.dnarep.2011.04.009 AtRAD5A is a DNA translocase harboring a HIRAN domain which confers binding to branched DNA structures and is required for DNA repair in vivo.2016 · DOI: 10.1111/tpj.13283
`At5g43530`	Possesses intrinsic ATP-dependent nucleosome-remodeling activity.	A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000724	double-strand break repair via homologous recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006289	nucleotide-excision repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.123; coverage=104.826; evalue=5.14e-145; UniProt GO evidence=IMP:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006325	chromatin organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009294	DNA-mediated transformation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019985	translesion synthesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0036297	interstrand cross-link repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042275	error-free postreplication DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071932	replication fork reversal	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005694	chromosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.123; coverage=104.826; evalue=5.14e-145; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.322; coverage=93.533; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035861	site of double-strand break	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.123; coverage=104.826; evalue=5.14e-145; UniProt GO evidence=IDA:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003676	nucleic acid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004386	helicase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008094	ATP-dependent activity, acting on DNA	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016887	ATP hydrolysis activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	afm:AFUA_5G12600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.616; coverage=111.293; evalue=1.61e-148	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G22750	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.536; coverage=101.544; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G43530	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.322; coverage=93.533; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	fgr:FGSG_02724	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.527; coverage=107.722; evalue=6.38e-162	UniProtKB/Swiss-Prot DAT 2026 current_release