TkA02G571720 | RubberDandelionOmics

Gene overview

TkA02G571720

Reference: TK1151 Chr: Chr02 Coordinates: 147628836-147638877 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · TkA02G571720|TK1151|cDNA

GTCGACACAAACGACGGAGAATCACCGGAGAATAATATTGTTTCCCCTACCTTTCCAAGCTACCCTCACTTCACCTTCAAATCCATCTCCGACCGATTTCATGAGATCGAACACCAGTCGCCGCTGATCCCGCCGGAGCCCGGTTATTTCCTCAGTTACCTTAATAGAAGCTGTGTAGATCCTTTTACGAATTGTCTGACTGGGTTGCTGGCGGATGAATCCAATAAAGGCTCGATTGCTTGTCTAGTCACCGACGCCGT...

CDS

Download CDS FASTA

1284 bp · TkA02G571720|TK1151|CDS

GTCGACACAAACGACGGAGAATCACCGGAGAATAATATTGTTTCCCCTACCTTTCCAAGCTACCCTCACTTCACCTTCAAATCCATCTCCGACCGATTTCATGAGATCGAACACCAGTCGCCGCTGATCCCGCCGGAGCCCGGTTATTTCCTCAGTTACCTTAATAGAAGCTGTGTAGATCCTTTTACGAATTGTCTGACTGGGTTGCTGGCGGATGAATCCAATAAAGGCTCGATTGCTTGTCTAGTCACCGACGCCGT...

Protein

Download Protein FASTA

427 aa · TkA02G571720|TK1151|PROTEIN

VDTNDGESPENNIVSPTFPSYPHFTFKSISDRFHEIEHQSPLIPPEPGYFLSYLNRSCVDPFTNCLTGLLADESNKGSIACLVTDAVFYFTQAVADTLKIPRMVLRTGSLSCTIAYGVLPIFSQSNKDRFNFTKELDDEENTFPDISPITKQDVVKILNDNLKEGKLDLISSMIQNTKSSSGVIWNTFKELEGPAYSAITQNFGVPSFTIGPFHKYFPASSSSLLEQDRNIITWLDLQPVRSVVYVSFGSIAQMGEAEFT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G571720`
TK1151 ID	TkA02G571720
OH-1004 ID	LXL04_012335
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	81.600
Protein coverage (%)	TK1151 96.721 / OH-1004 82.645 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G571720

Location Chr02:147628836-147638877 (+)

Description Similar to UGT76C4: UDP-glycosyltransferase 76C4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05860`	Involved in the N-glucosylation of cytokinins.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200
`At5g05880`	UDP-glycosyltransferase 76C4.	No verified direct reference in this release
`At5g05870`	Involved in the N-glucosylation of cytokinins.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200
`At3g11340`	Glycosylates the amino acid-related molecules isoleucic acid (2-hydroxy-3-methylpentanoic acid) and valic acid (2-hydroxy-3- methylbutyric acid).	The Arabidopsis glucosyltransferase UGT76B1 conjugates isoleucic acid and modulates plant defense and senescence.2011 · DOI: 10.1105/tpc.111.088443

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012335 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009690 cytokinin metabolic process Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0048316 seed development Biological Process

GO:1900000 regulation of anthocyanin catabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0047807 cytokinin 7-beta-glucosyltransferase activity Molecular Function

GO:0050139 nicotinate-N-glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

GO:0080044 quercetin 7-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G05860

ath:AT5G05870

ath:AT5G05880

ath:AT5G05890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.812

Rank 1 · TkA02G571720 · TK1151

Nucleus0.251

Rank 2 · TkA02G571720 · TK1151

Peroxisome0.056

Rank 3 · TkA02G571720 · TK1151

Endoplasmic reticulum0.056

Rank 4 · TkA02G571720 · TK1151

Cell membrane0.043

Rank 5 · TkA02G571720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201UDPGT70-109 aa

PF26168Glyco_transf_N173-214 aa

PF00201UDPGT241-387 aa

PF06722EryCIII-like_C305-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G571720	`PF00201`	UDPGT	70	109	1.3e-29	104.1
TkA02G571720	`PF26168`	Glyco_transf_N	173	214	0.21	12.1
TkA02G571720	`PF00201`	UDPGT	241	387	1.3e-29	104.1
TkA02G571720	`PF06722`	EryCIII-like_C	305	387	0.0008	20.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIA0`	Arabidopsis thaliana	sp\|Q9FIA0\|U76C2_ARATH UDP-glycosyltransferase 76C2	43.400%	Swiss-Prot	Medium
`Q9FI98`	Arabidopsis thaliana	sp\|Q9FI98\|U76C4_ARATH UDP-glycosyltransferase 76C4	44.800%	Swiss-Prot	Medium
`Q9FI99`	Arabidopsis thaliana	sp\|Q9FI99\|U76C1_ARATH UDP-glycosyltransferase 76C1	42.600%	Swiss-Prot	Medium
`Q9C768`	Arabidopsis thaliana	sp\|Q9C768\|U76B1_ARATH UDP-glycosyltransferase 76B1	43.000%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card