LXL04_012335 | RubberDandelionOmics

Gene overview

LXL04_012335

Reference: OH-1004 Chr: Chr03 Coordinates: 10542999-10547449 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1455 bp · LXL04_012335|LXL04_012335|OH1004|cDNA

ATGTACCAAAGAGGAGCATCGGAAGAGGAAATCGTACATAACTCACGTGAACTCCCCAAACTTCCATGTGGCAATACACACACATCTAAACACTCACCGGCAAACGCCATGTCCACCGCACCACGGCCCGACAACCGCCGACTGGCGCTTTTTCCGTTACCATTTCAAGGCCACATCAACCCCATGCTTCAGTTAGCAAACATTCTCCACACAAAAGGCTTCACGATTACCATCATTCACACCGATTTCAACTCGCCAAA...

CDS

Download CDS FASTA

1455 bp · LXL04_012335|LXL04_012335|OH1004|CDS

ATGTACCAAAGAGGAGCATCGGAAGAGGAAATCGTACATAACTCACGTGAACTCCCCAAACTTCCATGTGGCAATACACACACATCTAAACACTCACCGGCAAACGCCATGTCCACCGCACCACGGCCCGACAACCGCCGACTGGCGCTTTTTCCGTTACCATTTCAAGGCCACATCAACCCCATGCTTCAGTTAGCAAACATTCTCCACACAAAAGGCTTCACGATTACCATCATTCACACCGATTTCAACTCGCCAAA...

Protein

Download Protein FASTA

484 aa · LXL04_012335|LXL04_012335|OH1004|PROTEIN

MYQRGASEEEIVHNSRELPKLPCGNTHTSKHSPANAMSTAPRPDNRRLALFPLPFQGHINPMLQLANILHTKGFTITIIHTDFNSPKQSNYPQFTFKSISDGTSETKNMKSNLNLDTTNSLVNFMNKTYIDPFRDCLVKLQEEEPIACLISDALWHFTHKVADALHLPRIVLRTSSMSCVLVYAVLSEKRDAINDEENTFPDISPITKQDVVKILNDNLKEGKLDLISSMIQNTKSSSGVIWNTFKELEGPAYSAITQNF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012335`
TK1151 ID	TkA02G571720
OH-1004 ID	LXL04_012335
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	81.600
Protein coverage (%)	TK1151 96.721 / OH-1004 82.645 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012335

Location Chr03:10542999-10547449 (-)

Description Similar to UGT76C4: UDP-glycosyltransferase 76C4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05880`	UDP-glycosyltransferase 76C4.	No verified direct reference in this release
`At5g05870`	Involved in the N-glucosylation of cytokinins.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200
`At5g05860`	Involved in the N-glucosylation of cytokinins.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200
`At5g05890`	UDP-glycosyltransferase 76C5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012335 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009690 cytokinin metabolic process Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0048316 seed development Biological Process

GO:1900000 regulation of anthocyanin catabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0047807 cytokinin 7-beta-glucosyltransferase activity Molecular Function

GO:0050139 nicotinate-N-glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

GO:0080044 quercetin 7-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G05860

ath:AT5G05870

ath:AT5G05880

ath:AT5G05890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.759

Rank 1 · LXL04_012335 · OH-1004

Nucleus0.256

Rank 2 · LXL04_012335 · OH-1004

Endoplasmic reticulum0.064

Rank 3 · LXL04_012335 · OH-1004

Cell membrane0.055

Rank 4 · LXL04_012335 · OH-1004

Peroxisome0.055

Rank 5 · LXL04_012335 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26168.1Glyco_transf_N51-271 aa

PF00201.25UDPGT298-444 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012335	`PF26168.1`	Glyco_transf_N	51	271	2.5e-07	31.5
LXL04_012335	`PF00201.25`	UDPGT	298	444	9.5e-29	101.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FI98`	Arabidopsis thaliana	UDP-glycosyltransferase 76C4	47.450%	Swiss-Prot	moderate database homology
`Q9FI99`	Arabidopsis thaliana	UDP-glycosyltransferase 76C1	45.934%	Swiss-Prot	moderate database homology
`Q9FIA0`	Arabidopsis thaliana	UDP-glycosyltransferase 76C2	48.444%	Swiss-Prot	moderate database homology
`Q9FI97`	Arabidopsis thaliana	UDP-glycosyltransferase 76C5	45.934%	Swiss-Prot	moderate database homology

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