TkA02G569120 | RubberDandelionOmics

Gene overview

TkA02G569120

Reference: TK1151 Chr: Chr02 Coordinates: 147003741-147005432 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1180 bp · TkA02G569120|TK1151|cDNA

AACAAACCGGAAGGGTATGGCCAGCAATTTCTCCGTCAAATCCTCGTTCCGATTTCTTCCATTTTCGCCGCAGCTTTTACACGCTACCTCGATCGTCTCGGGCAACTGGTATTTGTACAGTTATTGAACGCTCTCTGGTCCTAATAATAGCGTTTTGTATGAGGCAACATCTATTTTTAAATTCAGTCATCCATATTGAATTCGATGCGTTTTAGTTGTTATCGAGTTGTGCATGATTCGTAATCATTCTCAATTGTATT...

CDS

Download CDS FASTA

567 bp · TkA02G569120|TK1151|CDS

ATGGCTGAAGCAATTGATTTGACCGGAGATGGAGGTGTGATGAAGACAATTGTGAAGAGAGCCAAACCTGATGCAATTGCTCCTTCTGAGAACCTTCCTCTTGTTGATGTGCATTATGAAGGAACACTGGAAGAAACAGGTGAAGTTTTTGATACCACACATGAAGACAACACAATCTTCAGCTTTGAATTAGGGAAGGGGTCTGTGATAAAAGCTTGGGATGTTGCTTTGAAAACCATGAAAGTTGGGGAGGTTGCCAA...

Protein

Download Protein FASTA

188 aa · TkA02G569120|TK1151|PROTEIN

MAEAIDLTGDGGVMKTIVKRAKPDAIAPSENLPLVDVHYEGTLEETGEVFDTTHEDNTIFSFELGKGSVIKAWDVALKTMKVGEVAKITCKSDYAYGSAGSPPEIPPNATLVFEVELVACRPRKGSSVASASDERARLDELKRQREMAAAQKEEEKKKREEAKAAAAARIQAKMDAKKGGGKGKGKGK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G569120`
TK1151 ID	TkA02G569120
OH-1004 ID	LXL04_012375
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 95.213 / OH-1004 89.055 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G569120

Location Chr02:147003741-147005432 (-)

Description Similar to FKBP20-1: Peptidyl-prolyl cis-trans isomerase FKBP20-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55520`	PPIases accelerate the folding of proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0006463 steroid hormone receptor complex assembly Biological Process

GO:0006825 copper ion transport Biological Process

GO:0030521 androgen receptor signaling pathway Biological Process

GO:0031111 negative regulation of microtubule polymerization or depolymerization Biological Process

GO:0031115 negative regulation of microtubule polymerization Biological Process

GO:0031503 protein-containing complex localization Biological Process

GO:0046661 male sex differentiation Biological Process

GO:0048608 reproductive structure development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G55520

hsa:2288

mmu:14228

ocu:100009148

rno:260321

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.645

Rank 1 · TkA02G569120 · TK1151

Nucleus0.463

Rank 2 · TkA02G569120 · TK1151

Cell membrane0.074

Rank 3 · TkA02G569120 · TK1151

Endoplasmic reticulum0.067

Rank 4 · TkA02G569120 · TK1151

Mitochondrion0.045

Rank 5 · TkA02G569120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00254FKBP_C34-118 aa

PF23322PPIase_AIP35-93 aa

PF16091DUF4820115-172 aa

PF17380DUF5401125-167 aa

PF14362DUF4407131-179 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G569120	`PF00254`	FKBP_C	34	118	1.2e-30	106.4
TkA02G569120	`PF23322`	PPIase_AIP	35	93	0.0003	21.9
TkA02G569120	`PF16091`	DUF4820	115	172	0.053	13.6
TkA02G569120	`PF17380`	DUF5401	125	167	0.025	13.4
TkA02G569120	`PF14362`	DUF4407	131	179	6.2	6.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2S7`	Arabidopsis thaliana	sp\|Q9M2S7\|FK201_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-1	78.200%	Swiss-Prot	High

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