TkA02G562220 | RubberDandelionOmics

Gene overview

TkA02G562220

Reference: TK1151 Chr: Chr02 Coordinates: 145225348-145226289 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · TkA02G562220|TK1151|cDNA

GTGGATCCCCTTCGGCAGTGTCTGGCTGGATTGTTGGCGGAATACGGCGAGGGATCGATTGGTTGTTTAATTACAGACGCCGGATTTTATTTCACGCAAGCGGTGGCAGAATCCCTTAAGCTCCCAAGGATGGTGCTCCGGACAAGCAGTGTTACTTGCCTCCTTGCTTGGGGAGTTTTACCCTTTTTCTCTGAAAATGATTACTTTAACCTTACAAAAGAAGATCCAAATTTCGAGTCATCCGTACCAGAATTTCCGGT...

CDS

Download CDS FASTA

525 bp · TkA02G562220|TK1151|CDS

GTGGATCCCCTTCGGCAGTGTCTGGCTGGATTGTTGGCGGAATACGGCGAGGGATCGATTGGTTGTTTAATTACAGACGCCGGATTTTATTTCACGCAAGCGGTGGCAGAATCCCTTAAGCTCCCAAGGATGGTGCTCCGGACAAGCAGTGTTACTTGCCTCCTTGCTTGGGGAGTTTTACCCTTTTTCTCTGAAAATGATTACTTTAACCTTACAAAAGAAGATCCAAATTTCGAGTCATCCGTACCAGAATTTCCGGT...

Protein

Download Protein FASTA

175 aa · TkA02G562220|TK1151|PROTEIN

VDPLRQCLAGLLAEYGEGSIGCLITDAGFYFTQAVAESLKLPRMVLRTSSVTCLLAWGVLPFFSENDYFNLTKEDPNFESSVPEFPVMKYKDMVKMTTNPKEMGNDITIMFDHMEASSGLIWNTFTELEEPALQTIHQQFPVPSFTLGPFHKYFPASSSSLIKQDQNVILWLDTQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G562220`
TK1151 ID	TkA02G562220
OH-1004 ID	LXL04_012420
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	80.600
Protein coverage (%)	TK1151 100.000 / OH-1004 36.842 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G562220

Location Chr02:145225348-145226289 (-)

Description Similar to UGT76G1: UDP-glycosyltransferase 76G1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05900`	UDP-glycosyltransferase 76C3.	No verified direct reference in this release
`At5g05890`	UDP-glycosyltransferase 76C5.	No verified direct reference in this release
`At3g55700`	UDP-glycosyltransferase 76F1.	No verified direct reference in this release
`At3g55710`	UDP-glycosyltransferase 76F2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012420 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002239 response to oomycetes Biological Process

GO:0006952 defense response Biological Process

GO:0009690 cytokinin metabolic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0048316 seed development Biological Process

GO:1900000 regulation of anthocyanin catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G11340

ath:AT3G55700

ath:AT5G05860

ath:AT5G05880

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.851

Rank 1 · TkA02G562220 · TK1151

Nucleus0.228

Rank 2 · TkA02G562220 · TK1151

Endoplasmic reticulum0.067

Rank 3 · TkA02G562220 · TK1151

Cell membrane0.040

Rank 4 · TkA02G562220 · TK1151

Peroxisome0.038

Rank 5 · TkA02G562220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI96`	Arabidopsis thaliana	sp\|Q9FI96\|U76C3_ARATH UDP-glycosyltransferase 76C3	39.600%	Swiss-Prot	Medium
`Q9FI97`	Arabidopsis thaliana	sp\|Q9FI97\|U76C5_ARATH UDP-glycosyltransferase 76C5	38.400%	Swiss-Prot	Medium
`Q9M052`	Arabidopsis thaliana	sp\|Q9M052\|U76F1_ARATH UDP-glycosyltransferase 76F1	34.800%	Swiss-Prot	Medium
`Q9M051`	Arabidopsis thaliana	sp\|Q9M051\|U76F2_ARATH UDP-glycosyltransferase 76F2	31.400%	Swiss-Prot	Medium

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