LXL04_012420 | RubberDandelionOmics

Gene overview

LXL04_012420

Reference: OH-1004 Chr: Chr03 Coordinates: 12100624-12104289 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1428 bp · LXL04_012420|LXL04_012420|OH1004|cDNA

ATGCCCTCGCCAAACATGGAGACCAATGGAAGTGATACCAATCTCCGGCACACACAATCTCCGGCAATTCGCCGAAGAATAATATTGTTTCCCATGCCATTCCAAGGTCATATAAATCCCATGCTCCAGCTAGCAAACATTCTTCACACCCAAGGTTTTGAAATAACCATCATACACACTGAATACAACTCCCCCAATCATTCAAACTATCCTCACTTCACCTTCAATTCCATCTCTGACCGATTATCCGAGATTGAAAA...

CDS

Download CDS FASTA

1428 bp · LXL04_012420|LXL04_012420|OH1004|CDS

ATGCCCTCGCCAAACATGGAGACCAATGGAAGTGATACCAATCTCCGGCACACACAATCTCCGGCAATTCGCCGAAGAATAATATTGTTTCCCATGCCATTCCAAGGTCATATAAATCCCATGCTCCAGCTAGCAAACATTCTTCACACCCAAGGTTTTGAAATAACCATCATACACACTGAATACAACTCCCCCAATCATTCAAACTATCCTCACTTCACCTTCAATTCCATCTCTGACCGATTATCCGAGATTGAAAA...

Protein

Download Protein FASTA

475 aa · LXL04_012420|LXL04_012420|OH1004|PROTEIN

MPSPNMETNGSDTNLRHTQSPAIRRRIILFPMPFQGHINPMLQLANILHTQGFEITIIHTEYNSPNHSNYPHFTFNSISDRLSEIENHLPMKANAEALYFVKYLNISCVDPFRGCLAGLLEKYGEGSIGCLITDAGFYFTQAVAESLKLPRMVLRTSSVSCVLAWGVLPFFPENNYFNLTKEDPNYESSAPEFPVIKFKDVAKMTTNPDGMRNYVTNMISHMKASSGLIWNTFKELEEPSLETIVQQFSVPSFALGPFHK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012420`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012420

Location Chr03:12100624-12104289 (+)

Description Similar to UGT76G1: UDP-glycosyltransferase 76G1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g11340`	Glycosylates the amino acid-related molecules isoleucic acid (2-hydroxy-3-methylpentanoic acid) and valic acid (2-hydroxy-3- methylbutyric acid).	The Arabidopsis glucosyltransferase UGT76B1 conjugates isoleucic acid and modulates plant defense and senescence.2011 · DOI: 10.1105/tpc.111.088443
`At5g05880`	UDP-glycosyltransferase 76C4.	No verified direct reference in this release
`At3g55700`	UDP-glycosyltransferase 76F1.	No verified direct reference in this release
`At5g05860`	Involved in the N-glucosylation of cytokinins.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012420 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002239 response to oomycetes Biological Process

GO:0006952 defense response Biological Process

GO:0009690 cytokinin metabolic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042631 cellular response to water deprivation Biological Process

GO:0048316 seed development Biological Process

GO:1900000 regulation of anthocyanin catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G11340

ath:AT3G55700

ath:AT5G05860

ath:AT5G05880

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.811

Rank 1 · LXL04_012420 · OH-1004

Nucleus0.262

Rank 2 · LXL04_012420 · OH-1004

Endoplasmic reticulum0.061

Rank 3 · LXL04_012420 · OH-1004

Peroxisome0.048

Rank 4 · LXL04_012420 · OH-1004

Cell membrane0.045

Rank 5 · LXL04_012420 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201.25UDPGT283-439 aa

PF06722.19EryCIII-like_C341-445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012420	`PF00201.25`	UDPGT	283	439	7.2e-30	105.0
LXL04_012420	`PF06722.19`	EryCIII-like_C	341	445	9.3e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C768`	Arabidopsis thaliana	UDP-glycosyltransferase 76B1	49.107%	Swiss-Prot	moderate database homology
`Q9FI98`	Arabidopsis thaliana	UDP-glycosyltransferase 76C4	46.785%	Swiss-Prot	moderate database homology
`Q9M052`	Arabidopsis thaliana	UDP-glycosyltransferase 76F1	46.137%	Swiss-Prot	moderate database homology
`Q9FIA0`	Arabidopsis thaliana	UDP-glycosyltransferase 76C2	48.998%	Swiss-Prot	moderate database homology

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