TkA02G561980 | RubberDandelionOmics

Gene overview

TkA02G561980

Reference: TK1151 Chr: Chr02 Coordinates: 145168361-145171122 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2416 bp · TkA02G561980|TK1151|cDNA

AAAAGCCTGACTACAACCTACGCAGATCACAAATGATCGCTTGTCCAGTTGGTTAATACACTGGTCTCCTTGTGGGAGGTCCAGTGTTCGAGTCTTCTGCCAAGCGTGATGTATTGGGTTTGATAACCCACATGGTGGGGTGTGGAGGTGCTGAGTACACGTTGACATGCTCGGATAAATCCTTCGCGCTCCGTTGCAACATCCGCCGTTTCCAAAAAAAAAAACAACCTACGCAGATCACTGAAAAGTGAAAACAGTTC...

CDS

Download CDS FASTA

1875 bp · TkA02G561980|TK1151|CDS

ATGACCGCGTCGAGGTTATTGCCAACGATCAGGGCAACAGAACAACGCCGTCTTATCACTTATGTGGCTTTTACCGATACCGAACGCCTTATCGGCGATGCTGCTAAAAATCAAGTGGCAATGAATCCCATAAATACGGTTTTCGATGCAAAACGATTAATCGGCCGAAGGTTTACTGATGCTTCCGTCCAGAGTGATATAAAGCTATGGCCATTCAAGGTCATTCCTGGACCTGCCGAGAAACCATTGATTGTGGTAAA...

Protein

Download Protein FASTA

624 aa · TkA02G561980|TK1151|PROTEIN

MTASRLLPTIRATEQRRLITYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDASVQSDIKLWPFKVIPGPAEKPLIVVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGTSVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKSSSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDITGNPRALRRLRTSCERAKRTLSST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G561980`
TK1151 ID	TkA02G561980
OH-1004 ID	LXL04_012423
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.300
Protein coverage (%)	TK1151 96.795 / OH-1004 93.475 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G561980

Location Chr02:145168361-145171122 (+)

Description Similar to HSP70: Heat shock cognate 70 kDa protein

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12580`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Comprehensive expression profile analysis of the Arabidopsis Hsp70 gene family.2001 · DOI: 10.1104/pp.126.2.789 Heat shock protein cognate 70-4 and an E3 ubiquitin ligase, CHIP, mediate plastid-destined precursor degradation through the ubiquitin-26S proteasome system in Arabidopsis.2009 · DOI: 10.1105/tpc.109.071548
`At5g02490`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions.	No verified direct reference in this release
`At5g02500`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Physiological and molecular assessment of altered expression of Hsc70-1 in Arabidopsis. Evidence for pleiotropic consequences.2003 · DOI: 10.1104/pp.102.019398 Interaction between SGT1 and cytosolic/nuclear HSC70 chaperones regulates Arabidopsis immune responses.2007 · DOI: 10.1105/tpc.107.051896 WPP-domain proteins mimic the activity of the HSC70-1 chaperone in preventing mistargeting of RanGAP1-anchoring protein WIT1.2009 · DOI: 10.1104/pp.109.143404 The cytosolic/nuclear HSC70 and HSP90 molecular chaperones are important for stomatal closure and modulate abscisic acid-dependent physiological responses in Arabidopsis.2011 · DOI: 10.1104/pp.111.174425
`At3g09440`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012423 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006457 protein folding Biological Process

GO:0006950 response to stress Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0009408 response to heat Biological Process

GO:0009615 response to virus Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0010286 heat acclimation Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042026 protein refolding Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT3G12580

ath:AT5G02500

sly:101247772

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.627

Rank 1 · TkA02G561980 · TK1151

Nucleus0.318

Rank 2 · TkA02G561980 · TK1151

Cell membrane0.123

Rank 3 · TkA02G561980 · TK1151

Endoplasmic reticulum0.107

Rank 4 · TkA02G561980 · TK1151

Mitochondrion0.094

Rank 5 · TkA02G561980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00012HSP7016-595 aa

PF06723MreB_Mbl118-357 aa

PF01968Hydantoinase_A153-194 aa

PF21523ParM_N177-212 aa

PF25601AAA_lid_14219-247 aa

PF16469NPA275-310 aa

PF02782FGGY_C293-362 aa

PF16469NPA495-521 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G561980	`PF00012`	HSP70	16	595	5.7e-239	795.0
TkA02G561980	`PF06723`	MreB_Mbl	118	357	7.9e-14	51.9
TkA02G561980	`PF01968`	Hydantoinase_A	153	194	0.075	13.0
TkA02G561980	`PF21523`	ParM_N	177	212	0.086	13.6
TkA02G561980	`PF25601`	AAA_lid_14	219	247	0.49	11.0
TkA02G561980	`PF16469`	NPA	275	310	0.064	14.6
TkA02G561980	`PF02782`	FGGY_C	293	362	0.0019	18.8
TkA02G561980	`PF16469`	NPA	495	521	0.064	14.6
TkA02G561980	`PF25601`	AAA_lid_14	495	530	0.49	11.0
TkA02G561980	`PF01968`	Hydantoinase_A	544	575	0.075	13.0
TkA02G561980	`PF21523`	ParM_N	547	577	0.086	13.6
TkA02G561980	`PF16469`	NPA	550	584	0.064	14.6
TkA02G561980	`PF25601`	AAA_lid_14	555	581	0.49	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHA8`	Arabidopsis thaliana	sp\|Q9LHA8\|HS704_ARATH Heat shock 70 kDa protein 4	86.700%	Swiss-Prot	High
`P22954`	Arabidopsis thaliana	sp\|P22954\|HS702_ARATH Heat shock 70 kDa protein 2	86.700%	Swiss-Prot	High
`P22953`	Arabidopsis thaliana	sp\|P22953\|HS701_ARATH Heat shock 70 kDa protein 1	94.400%	Swiss-Prot	High
`O65719`	Arabidopsis thaliana	sp\|O65719\|HSP7C_ARATH Heat shock 70 kDa protein 3	93.200%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card