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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G556020
Reference: TK1151 Chr: Chr02 Coordinates: 143507304-143510637 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2633 bp · TkA02G556020|TK1151|cDNA

AGTTGACTCAAGGCTAAAATGCTGGAAAGCATAAAAGTAAACATTAACTGTAGAATGAAGATCAGAGTGTATGGAGCGTCTTCCAATGATTTGGTTCTACTGCTTTGCTCTAGTCATCACCATGAAAACCAGTAATGCAATAGACACCATGCTTTCAAATCAGACCCTCAAAGATGGCGAGACCCTTGTTTCAAAAGCCGAAGTTTTTGAATTGGGGTTTTTCAGCCTTGGGAATTCATCCTTTCGGTACCTGGGGATAC...

CDS

Download CDS FASTA

2451 bp · TkA02G556020|TK1151|CDS

ATGGAGCGTCTTCCAATGATTTGGTTCTACTGCTTTGCTCTAGTCATCACCATGAAAACCAGTAATGCAATAGACACCATGCTTTCAAATCAGACCCTCAAAGATGGCGAGACCCTTGTTTCAAAAGCCGAAGTTTTTGAATTGGGGTTTTTCAGCCTTGGGAATTCATCCTTTCGGTACCTGGGGATACGGTATAAGCAAGTACCAGAGCGTACCTTTGTATGGGTTGCTAACAGAGAGGTACCAGTGACTGACCCCAC...

Protein

Download Protein FASTA

816 aa · TkA02G556020|TK1151|PROTEIN

MERLPMIWFYCFALVITMKTSNAIDTMLSNQTLKDGETLVSKAEVFELGFFSLGNSSFRYLGIRYKQVPERTFVWVANREVPVTDPTGVLKITDNGTLELHSVDNKLLWSSHSSKPSTDINPVAQLLDTGNLVIRDDISGDIIWQSFDHPGDTWLPGMKIGVDLVTGLQWNLTSWKSSEDPSSGLYTLWMGMANTGYPQLYNMKDESSLQQNIGYWNGQGFTGMPGFERNNFYMFNFVSTDKEIYYIYTPLDSSYLTRMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G556020
TK1151 IDTkA02G556020
OH-1004 IDLXL04_016429
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)51.400
Protein coverage (%)TK1151 99.755 / OH-1004 97.491
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G556020
LocationChr02:143507304-143510637 (-)
DescriptionSimilar to At4g27290: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27290 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290. No verified direct reference in this release
At4g27300 G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1. No verified direct reference in this release
At4g21380 Involved in the regulation of cellular expansion and differentiation. No verified direct reference in this release
At1g65790 Involved in the regulation of cellular expansion and differentiation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016429 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006955 immune response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048544 recognition of pollen Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G65790
ath:AT1G65800
ath:AT4G21380
ath:AT4G27290
ath:AT4G27300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.864
Rank 1 · TkA02G556020 · TK1151
Endoplasmic reticulum0.078
Rank 2 · TkA02G556020 · TK1151
Cytoplasm0.070
Rank 3 · TkA02G556020 · TK1151
Nucleus0.036
Rank 4 · TkA02G556020 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA02G556020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin72-176 aa
PF00954S_locus_glycop90-118 aa
PF00954S_locus_glycop213-319 aa
PF00008EGF288-317 aa
PF08276PAN_2341-405 aa
PF14295PAN_4364-383 aa
PF14610Psg1415-469 aa
PF09716ETRAMP425-468 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G556020PF01453B_lectin721764.4e-36124.2
TkA02G556020PF00954S_locus_glycop901184.8e-2898.6
TkA02G556020PF00954S_locus_glycop2133194.8e-2898.6
TkA02G556020PF00008EGF2883171.110.3
TkA02G556020PF08276PAN_23414054.3e-1659.5
TkA02G556020PF14295PAN_43643830.1912.5
TkA02G556020PF14610Psg14154690.0613.8
TkA02G556020PF09716ETRAMP4254680.1412.9
TkA02G556020PF16492Cadherin_C_24404770.213.1
TkA02G556020PF07714PK_Tyr_Ser-Thr4997674.6e-51174.3
TkA02G556020PF00069Pkinase4997678.5e-47160.5
TkA02G556020PF03109ABC15055290.0001821.5
TkA02G556020PF03109ABC15666530.0001821.5
TkA02G556020PF12330Haspin_kinase5946480.0314.1
TkA02G556020PF01636APH6116450.1812.3
TkA02G556020PF11883DUF34037728160.0001422.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81832Arabidopsis thalianasp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g2729049.100%Swiss-ProtMedium
O81833Arabidopsis thalianasp|O81833|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-146.200%Swiss-ProtMedium
O81905Arabidopsis thalianasp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-843.500%Swiss-ProtMedium
Q39086Arabidopsis thalianasp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-743.300%Swiss-ProtMedium

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