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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G540330
Reference: TK1151 Chr: Chr02 Coordinates: 139388782-139392086 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2475 bp · TkA02G540330|TK1151|cDNA

TTTGGGTACATTAGCTTTCCCAAAATCCCATTTATGAAAAGAATGATTGTTGCCGATTTTTTTAGCAATTTGATATTGTCGACACCTATCTGGTAGGGTTTCCAGTACATAAAGTTATCTTTTGGCTTGTTGGATCTCTTTGTTGACGAAGGGTACGAAGTTTTTCTTGAAGAGCTCTAACTCTGTCTTCAGTACTTCGAAGCTTTCTGTATCTGTATGCTACCCAGAGACCAAATCCACCATACACAATAAAATAGGAG...

CDS

Download CDS FASTA

1953 bp · TkA02G540330|TK1151|CDS

ATGGTAATCACTAGGAGGTCATTAAAATGCACTTCCATCGCTCTTCGCACAGTTCTATCACCCCGCCTGCAGTTTATAAGGCCTTATTCCAAACAGTTACGTTCGAATGACACCAACATCCGCATACTGAATAACCGAATCACAAGCTTAATTCGAGACAGTAAACTGCATGACGCAAGGATTTTGTTCGAAAAATCAGAACATAGAAACACGGTAACCTGGAATTCAATGCTGAGCGGGTACGTAAGACGGCGAGAGAT...

Protein

Download Protein FASTA

650 aa · TkA02G540330|TK1151|PROTEIN

MVITRRSLKCTSIALRTVLSPRLQFIRPYSKQLRSNDTNIRILNNRITSLIRDSKLHDARILFEKSEHRNTVTWNSMLSGYVRRREIAKARQLFDEMPERDTVSWNTLISGYVVCRCLEEARVLFDEMPCKDLVSWNTIISGYAKNGKMDEALRLFTQAPNRNAVSWNAMVSGFLQNGDLKNAVEYFKKMPERDAASLSALVSGLIHNDELDTAEKILLEIPLKNEDKMDMVHAYNTLIAGYGRKGRIQDARRLFDQIPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G540330
TK1151 IDTkA02G540330
OH-1004 IDLXL04_024214
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)43.000
Protein coverage (%)TK1151 38.154 / OH-1004 29.040
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G540330
LocationChr02:139388782-139392086 (+)
DescriptionSimilar to PCMP-E90: Pentatricopeptide repeat-containing protein At3g02330, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g62260 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At4g16835 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024214 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0060090 molecular adaptor activity Molecular Function
KEGG gene cross-reference
ath:AT3G02330
ath:AT3G09040
ath:AT4G39530
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.646
Rank 1 · TkA02G540330 · TK1151
Plastid0.195
Rank 2 · TkA02G540330 · TK1151
Nucleus0.058
Rank 3 · TkA02G540330 · TK1151
Cytoplasm0.032
Rank 4 · TkA02G540330 · TK1151
Cell membrane0.006
Rank 5 · TkA02G540330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09613HrpB1_HrpK24-46 aa
PF28280SsaO24-82 aa
PF29070MSC6_N35-109 aa
PF13041PPR_241-64 aa
PF13424TPR_1243-66 aa
PF01535PPR44-65 aa
PF29978ATP18_TPR54-76 aa
PF05843Suf67-95 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G540330PF09613HrpB1_HrpK24460.009116.4
TkA02G540330PF28280SsaO24820.1713.0
TkA02G540330PF29070MSC6_N351097.2e-1555.7
TkA02G540330PF13041PPR_241643.4e-100328.7
TkA02G540330PF13424TPR_1243660.0008920.1
TkA02G540330PF01535PPR44651.5e-104335.9
TkA02G540330PF29978ATP18_TPR54760.3511.5
TkA02G540330PF05843Suf67957.7e-0522.1
TkA02G540330PF05843Suf68997.7e-0522.1
TkA02G540330PF13041PPR_2691003.4e-100328.7
TkA02G540330PF12854PPR_169972.5e-79261.4
TkA02G540330PF13812PPR_3701001.1e-35122.3
TkA02G540330PF17049AEP1701120.003517.2
TkA02G540330PF01535PPR721001.5e-104335.9
TkA02G540330PF13428TPR_1474979.5e-0935.8
TkA02G540330PF24603TPR_3075955.2e-1246.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O04590Arabidopsis thalianasp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial56.200%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275039.300%Swiss-ProtLow
Q9M4P3Arabidopsis thalianasp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial43.300%Swiss-ProtLow
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360041.000%Swiss-ProtLow
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914240.600%Swiss-ProtLow

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