TkA02G514210 | RubberDandelionOmics

Gene overview

TkA02G514210

Reference: TK1151 Chr: Chr02 Coordinates: 132385705-132387301 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1050 bp · TkA02G514210|TK1151|cDNA

ATGTATAATTACATTCACGCGGATCGAGTTTTGAGCAGTTTGTCATGGGGGAAAGCAGCGAGAGTTCGACGATGGAAGAAGGTCAAAATCACCCAAAAAAACGCCGATAAGATTGAAGAAGTCACGGAGAAGGGGAGAGAGGATCAAATCAGTGCGTTACCAAATTGCGTGCTACTTGAAATTCTCTCTCGTTTACCCTCTACTCAAGACGCCATTAGAACAGCGGTGGACAAAACCCTAACTCAATGTCGCCAATTGAA...

CDS

Download CDS FASTA

1050 bp · TkA02G514210|TK1151|CDS

ATGTATAATTACATTCACGCGGATCGAGTTTTGAGCAGTTTGTCATGGGGGAAAGCAGCGAGAGTTCGACGATGGAAGAAGGTCAAAATCACCCAAAAAAACGCCGATAAGATTGAAGAAGTCACGGAGAAGGGGAGAGAGGATCAAATCAGTGCGTTACCAAATTGCGTGCTACTTGAAATTCTCTCTCGTTTACCCTCTACTCAAGACGCCATTAGAACAGCGGTGGACAAAACCCTAACTCAATGTCGCCAATTGAA...

Protein

Download Protein FASTA

349 aa · TkA02G514210|TK1151|PROTEIN

MYNYIHADRVLSSLSWGKAARVRRWKKVKITQKNADKIEEVTEKGREDQISALPNCVLLEILSRLPSTQDAIRTAVDKTLTQCRQLKLKKFELDTVYDVEFESQFNEWIRHAISCKAEELYFGWIRYAIRCNIKNICLSFWSSRGYLPEFTLDQFIFTSSCFTELRLDGCKVNPIREIIWKNLRSLCISFGLLNDKIIENILSGSPVLETLELENCFGYKRLDIISKSVKNLVLSGYMNYHDKSPNGVIEINAPNILSLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G514210`
TK1151 ID	TkA02G514210
OH-1004 ID	LXL04_027366
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	52.100
Protein coverage (%)	TK1151 86.819 / OH-1004 13.743 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G514210

Location Chr02:132385705-132387301 (+)

Description Similar to At1g49610: Putative F-box protein At1g49610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02910`	F-box/LRR-repeat protein At5g02910.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027366 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.937

Rank 1 · TkA02G514210 · TK1151

Cytoplasm0.105

Rank 2 · TkA02G514210 · TK1151

Cell membrane0.026

Rank 3 · TkA02G514210 · TK1151

Endoplasmic reticulum0.020

Rank 4 · TkA02G514210 · TK1151

Plastid0.013

Rank 5 · TkA02G514210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23729Spectrin_Dys-128-40 aa

PF00646F-box50-67 aa

PF12937F-box-like50-73 aa

PF23729Spectrin_Dys-169-132 aa

PF23622LRR_At1g61320_AtMIF188-280 aa

PF28978RRM_SRRT103-143 aa

PF24758LRR_At5g56370123-267 aa

PF28978RRM_SRRT175-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G514210	`PF23729`	Spectrin_Dys-1	28	40	0.17	12.6
TkA02G514210	`PF00646`	F-box	50	67	0.029	15.0
TkA02G514210	`PF12937`	F-box-like	50	73	0.05	14.1
TkA02G514210	`PF23729`	Spectrin_Dys-1	69	132	0.17	12.6
TkA02G514210	`PF23622`	LRR_At1g61320_AtMIF1	88	280	1.5e-10	41.8
TkA02G514210	`PF28978`	RRM_SRRT	103	143	0.15	12.9
TkA02G514210	`PF24758`	LRR_At5g56370	123	267	2.5e-10	41.2
TkA02G514210	`PF28978`	RRM_SRRT	175	181	0.15	12.9
TkA02G514210	`PF00646`	F-box	193	203	0.029	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYZ4`	Arabidopsis thaliana	sp\|Q9LYZ4\|FBL79_ARATH F-box/LRR-repeat protein At5g02910	29.300%	Swiss-Prot	Low

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