TkA02G502420 | RubberDandelionOmics

Gene overview

TkA02G502420

Reference: TK1151 Chr: Chr02 Coordinates: 128776231-128784144 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2619 bp · TkA02G502420|TK1151|cDNA

ATAATGATAATAATAATAGCAATAATAATAATAACAATATAGAAATGACTAATCGGGAAAAGAATATCAAATCTAGGGGTTAAACGGTATAAAACAAAAACTGAAATAACAACTTTAATGATTTTAGGGTGTAAATTAAATAAGAACTAGTTCTCTAGGGGGGGGGGGAATAAATAGAAAACAATTGATGGAGGGGGCTGAATGTAACTTGGACAATTAACCGATGGAATCGGAAGAAGGAGGGTCGCGACCTCCTTTCT...

CDS

Download CDS FASTA

1407 bp · TkA02G502420|TK1151|CDS

ATGTTTCAGGTAGTTTTAGAGGTCGATCGACTTGGTGAGATGGGGAACTTTGTGGGTAGACGTCCCCGAGCTATGATACCGCGCGTTTTGAAAACACTGAGTGTAGGGGGGGAAATGAAGCAAAATTCGTGGAGGTCAGCTTACAACAAGAATCAGTTGGGTTTCAAGATAGGGATTTCGATTTTGTTCCTGGGTTTTGGATTCATACTTATTTTCTCGCAATCATTCAGTGTGATACCTGATGTTTCTGATAATAATAT...

Protein

Download Protein FASTA

468 aa · TkA02G502420|TK1151|PROTEIN

MFQVVLEVDRLGEMGNFVGRRPRAMIPRVLKTLSVGGEMKQNSWRSAYNKNQLGFKIGISILFLGFGFILIFSQSFSVIPDVSDNNIDTPVTEKNLKLIPSDFTDSPNKEINQIHPKDDKTGKCDIFSGDWIPSPDGSPYTNNSCRWIGSDQNCLTNGRPDTGYLYWRWKPKACDLPRFDPKKFLEMMRDKSWGFVGDSITRNHLQSFICILSQVEDAVDISDDKNCNKNQKWHFPSSNLTVSVIWSPFLAKTDTNGVQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G502420`
TK1151 ID	TkA02G502420
OH-1004 ID	LXL04_011580
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.400
Protein coverage (%)	TK1151 91.880 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G502420

Location Chr02:128776231-128784144 (-)

Description Similar to TBL23: Protein trichome birefringence-like 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g01080`	May be involved in the O-acetylation of mannan.	No verified direct reference in this release
`At4g23790`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At4g11090`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At1g01430`	May be involved in the O-acetylation of mannan.	No verified direct reference in this release
`At5g15900`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011580 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01430

ath:AT4G01080

ath:AT4G11090

ath:AT4G23790

ath:AT5G15900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.593

Rank 1 · TkA02G502420 · TK1151

Endoplasmic reticulum0.104

Rank 2 · TkA02G502420 · TK1151

Cell membrane0.077

Rank 3 · TkA02G502420 · TK1151

Extracellular0.059

Rank 4 · TkA02G502420 · TK1151

Cytoplasm0.035

Rank 5 · TkA02G502420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N123-175 aa

PF13839PC-Esterase176-463 aa

PF14416PMR5N221-232 aa

PF14416PMR5N287-320 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G502420	`PF14416`	PMR5N	123	175	4e-19	69.4
TkA02G502420	`PF13839`	PC-Esterase	176	463	1.5e-85	288.3
TkA02G502420	`PF14416`	PMR5N	221	232	4e-19	69.4
TkA02G502420	`PF14416`	PMR5N	287	320	4e-19	69.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O04621`	Arabidopsis thaliana	sp\|O04621\|TBL26_ARATH Protein trichome birefringence-like 26	52.900%	Swiss-Prot	High
`Q8H1R3`	Arabidopsis thaliana	sp\|Q8H1R3\|TBL24_ARATH Protein trichome birefringence-like 24	46.800%	Swiss-Prot	Medium
`O82509`	Arabidopsis thaliana	sp\|O82509\|TBL23_ARATH Protein trichome birefringence-like 23	50.300%	Swiss-Prot	High
`Q84JH9`	Arabidopsis thaliana	sp\|Q84JH9\|TBL25_ARATH Protein trichome birefringence-like 25	47.400%	Swiss-Prot	Medium
`Q9LFT0`	Arabidopsis thaliana	sp\|Q9LFT0\|TBL19_ARATH Protein trichome birefringence-like 19	43.600%	Swiss-Prot	Medium

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