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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G489940
Reference: TK1151 Chr: Chr02 Coordinates: 125265474-125269432 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2621 bp · TkA02G489940|TK1151|cDNA

AATTAATTATCTCATATTCATGACTATTTTATATCCGTACGTGTAATCCTCCATTTACCATTCTTGAAATCAGGTGTTGTCTTTCTTCCTCCATTTCTGCCATCTGCTTTCATTTTTCTGCAAAGTTTTTGCTCCTCCCAACACTACTTCATCAATTGTGAGTTTCAGTTTCAATTTTGTGCAAGACGACGACAAGATTGCTTCTACTTTACATTTTCCATTAGAATCGAAGCTCGTCCTGCTACGAATTTGCACTAATT...

CDS

Download CDS FASTA

1683 bp · TkA02G489940|TK1151|CDS

ATGGAACAAAACTCATGGCCTTGGACAAAATCATCCACAGAGAAAACAATGATTCCATCTGACAAAGTGAATGAAGATGAGACAAATTTGAAAACTTCAGATGAAAAGCTTTCAGAGATCAATGCTAAAGATGACATCACAAAGAAGCAAACAAGCATTGCACGAGAAGCCATTCAAGGATGGGAGAAAGCTGAAACGGAAGTTTTAGCGTTAAAGCAAGAACTAGAAAAAGCTACGCAACAAAGAGAAGCATTAAATGA...

Protein

Download Protein FASTA

560 aa · TkA02G489940|TK1151|PROTEIN

MEQNSWPWTKSSTEKTMIPSDKVNEDETNLKTSDEKLSEINAKDDITKKQTSIAREAIQGWEKAETEVLALKQELEKATQQREALNECMLQIRFVREEQEKKIHGDLMKTSNEHEIKISELNKKVSDLELDNSQLMYALSSKEKTIDQLDYDLRSVVGQLESTQRENASLSYEVRVLEKELEIRNEEREFNRRAADVAHKQYLGSVKKIAQLETEAQRLRALLQKRLPGPADVAKMKNAVDHTRRRSNPLPIASKITFLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G489940
TK1151 IDTkA02G489940
OH-1004 IDLXL04_013560
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 98.750 / OH-1004 81.563
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G489940
LocationChr02:125265474-125269432 (+)
DescriptionSimilar to FPP7: Filament-like plant protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23360 Filament-like plant protein 7. No verified direct reference in this release
At1g77580 Filament-like plant protein 1. No verified direct reference in this release
At3g05270 Ensures, when in complex with COG2 and FPP2/VETH2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1. No verified direct reference in this release
At1g21810 Ensures, when in complex with FPP3/VETH1 and COG2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013560 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010090 trichome morphogenesis Biological Process
GO:0046785 microtubule polymerization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0008017 microtubule binding Molecular Function
KEGG gene cross-reference
ath:AT1G19835
ath:AT1G47900
ath:AT2G23360
ath:AT4G36120
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.596
Rank 1 · TkA02G489940 · TK1151
Nucleus0.276
Rank 2 · TkA02G489940 · TK1151
Cell membrane0.190
Rank 3 · TkA02G489940 · TK1151
Golgi apparatus0.081
Rank 4 · TkA02G489940 · TK1151
Endoplasmic reticulum0.051
Rank 5 · TkA02G489940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10473CENP-F_leu_zip34-160 aa
PF05911FPP43-281 aa
PF00509Hemagglutinin77-168 aa
PF01166TSC22117-141 aa
PF10473CENP-F_leu_zip155-224 aa
PF01166TSC22156-170 aa
PF01166TSC22207-223 aa
PF10473CENP-F_leu_zip253-280 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G489940PF10473CENP-F_leu_zip341600.004717.7
TkA02G489940PF05911FPP432811.6e-93315.3
TkA02G489940PF00509Hemagglutinin771680.02413.8
TkA02G489940PF01166TSC221171410.4911.3
TkA02G489940PF10473CENP-F_leu_zip1552240.004717.7
TkA02G489940PF01166TSC221561700.4911.3
TkA02G489940PF01166TSC222072230.4911.3
TkA02G489940PF10473CENP-F_leu_zip2532800.004717.7
TkA02G489940PF01166TSC222542780.4911.3
TkA02G489940PF05911FPP2833481.6e-93315.3
TkA02G489940PF10473CENP-F_leu_zip3313610.004717.7
TkA02G489940PF05911FPP3354551.6e-93315.3
TkA02G489940PF01166TSC223433540.4911.3
TkA02G489940PF01348Intron_maturas23584360.04414.5
TkA02G489940PF10473CENP-F_leu_zip5005380.004717.7
TkA02G489940PF05911FPP5015531.6e-93315.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SLN1Arabidopsis thalianasp|Q9SLN1|FPP7_ARATH Filament-like plant protein 730.200%Swiss-ProtMedium
Q9CAP9Arabidopsis thalianasp|Q9CAP9|FPP1_ARATH Filament-like plant protein 130.300%Swiss-ProtLow
Q9MA92Arabidopsis thalianasp|Q9MA92|FPP3_ARATH Filament-like plant protein 324.300%Swiss-ProtLow
Q9SFF4Arabidopsis thalianasp|Q9SFF4|FPP2_ARATH Filament-like plant protein 229.900%Swiss-ProtLow

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