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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G487110
Reference: TK1151 Chr: Chr02 Coordinates: 124602801-124605179 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1479 bp · TkA02G487110|TK1151|cDNA

ATGAGCACTATTGATGCAAACACGGTTCCATTTGGAGCCCTCGTCAGTGTTGTACTGAAAGGACTTCGTCATCTTGAAATGGAAGCAAATTTTAACAACAAGGATAAAGATGGAGACGCAGATTTCACATTCATACGACTACTCGATCTCCTCACTAAAGATGCTGACCGACTAAGACAAATTGTAGAAGAAAAAAGTCAAAATCAAGATAAGGAGAAAGAGAAAGGAAAAGGAAAAGAAAAAGAGAGCGATGCTATGGT...

CDS

Download CDS FASTA

1479 bp · TkA02G487110|TK1151|CDS

ATGAGCACTATTGATGCAAACACGGTTCCATTTGGAGCCCTCGTCAGTGTTGTACTGAAAGGACTTCGTCATCTTGAAATGGAAGCAAATTTTAACAACAAGGATAAAGATGGAGACGCAGATTTCACATTCATACGACTACTCGATCTCCTCACTAAAGATGCTGACCGACTAAGACAAATTGTAGAAGAAAAAAGTCAAAATCAAGATAAGGAGAAAGAGAAAGGAAAAGGAAAAGAAAAAGAGAGCGATGCTATGGT...

Protein

Download Protein FASTA

492 aa · TkA02G487110|TK1151|PROTEIN

MSTIDANTVPFGALVSVVLKGLRHLEMEANFNNKDKDGDADFTFIRLLDLLTKDADRLRQIVEEKSQNQDKEKEKGKGKEKESDAMVIKPAKRKFTNVILSDDEEEEKRLQTLRLKQIDIGTSSRPKTGARIPQSDVMILKGHTAEVYDCAWNPSGFFLASGSKDSTAMIWTIPNRINNYGLQSGPANGVVLKHSKGRSKEKGKDVTQIGWHMDGTLLATASFDGKARIWSRNGDIKSTFSGHEGPVFCVKWNKNCDYLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G487110
TK1151 IDTkA02G487110
OH-1004 IDLXL04_031731
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)38.700
Protein coverage (%)TK1151 97.967 / OH-1004 83.971
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G487110
LocationChr02:124602801-124605179 (-)
DescriptionSimilar to HOS15: WD40 repeat-containing protein HOS15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g67320 Acts as a repressor of cold stress-regulated gene expression.
Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance.2008 · DOI: 10.1073/pnas.0801029105

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031731 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0002021 response to dietary excess Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009409 response to cold Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0016042 lipid catabolic process Biological Process
GO:0035264 multicellular organism growth Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0043627 response to estrogen Biological Process
KEGG gene cross-reference
ath:AT5G67320
mmu:21372
mmu:81004
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.892
Rank 1 · TkA02G487110 · TK1151
Cytoplasm0.172
Rank 2 · TkA02G487110 · TK1151
Cell membrane0.024
Rank 3 · TkA02G487110 · TK1151
Mitochondrion0.017
Rank 4 · TkA02G487110 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA02G487110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20827PCF11_charged33-133 aa
PF29630ASA162-111 aa
PF23770Beta-prop_RIG_1st63-189 aa
PF30361TRM82_WD65-97 aa
PF16529Ge1_WD40109-173 aa
PF24807WD40_CDC20-Fz131-175 aa
PF23609Beta-prop_EIPR1133-171 aa
PF25460Beta-prop_Aladin134-188 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G487110PF20827PCF11_charged331330.3111.7
TkA02G487110PF29630ASA1621111.9e-0627.7
TkA02G487110PF23770Beta-prop_RIG_1st631891.7e-0524.4
TkA02G487110PF30361TRM82_WD65970.02114.4
TkA02G487110PF16529Ge1_WD401091730.0912.5
TkA02G487110PF24807WD40_CDC20-Fz1311752.7e-59201.6
TkA02G487110PF23609Beta-prop_EIPR11331714.4e-0627.1
TkA02G487110PF25460Beta-prop_Aladin1341882.6e-29103.2
TkA02G487110PF23756Beta-prop_HPS51342181.3e-0525.4
TkA02G487110PF24817WD40_WDHD1_1st1351743.1e-45155.3
TkA02G487110PF23414Beta-prop_EML_21361725.3e-31108.7
TkA02G487110PF25172Beta-prop_WDR3_2nd1361723.9e-29102.5
TkA02G487110PF25047Beta-prop_TEP1_2nd1362311.1e-2797.5
TkA02G487110PF25175Beta-prop_WDR51371741.2e-66225.7
TkA02G487110PF00400WD401371719.3e-66216.2
TkA02G487110PF25173Beta-prop_WDR3_1st1371824.3e-60203.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FN19Arabidopsis thalianasp|Q9FN19|HOS15_ARATH WD40 repeat-containing protein HOS1561.200%Swiss-ProtHigh

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