Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2757 bp · TkA02G479730|TK1151|cDNA
GTTGGCGTGCCCAAATTAACATCACGAAATTACAAGAAAACAAACAAAAAGAGATAAAAGGAAAATGAGGAGAAATATCACGTTCGTCGGGAGTATCGGAACTACCCTTGTTATCGTGGTTGTTACGATGGCTATCATCATTTCCCTTGCTCGCTCTTTTCATCGCCCCCTGTGCACTTCTTCTTCTACCACTAAACATCTTCTTAAATCTCGCATCTGTCCTCTCTGGTCTCCTTCTTTCTTCCTCTGCCTACCTACTA...
2379 bp · TkA02G479730|TK1151|CDS
ATGAGGAGAAATATCACGTTCGTCGGGAGTATCGGAACTACCCTTGTTATCGTGGTTGTTACGATGGCTATCATCATTTCCCTTGCTCGCTCTTTTCATCGCCCCCTGTGCACTTCTTCTTCTACCACTAAACATCTTCTTAAATCTCGCATCTGTCCTCTCTGGTCTCCTTCTTTCTTCCTCTGCCTACCTACTACTCCTCGCACAACTCTTCTCCGCCACTCGCCCGCCGCCGCTCCTCGCCGTGCTTCATTCTGTTC...
Protein
Download Protein FASTA792 aa · TkA02G479730|TK1151|PROTEIN
MRRNITFVGSIGTTLVIVVVTMAIIISLARSFHRPLCTSSSTTKHLLKSRICPLWSPSFFLCLPTTPRTTLLRHSPAAAPRRASFCSATLPSSMTTVADENPLLKDFEFPPFDVIDASHVRPGMRALLNKLDSDLAELEKNVEPSWPKLVEPLEKMMDRLTVVWGAINHLKAVKDTPELRSAIEEIQPEKVVFDLKLGQSKPIYNAFKAIRESPDWAKLSDAQKRIVESSLKEAVLSGVSLEDSKREEFNQIQQELAMLS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G479730 |
|---|---|
| TK1151 ID | TkA02G479730 |
| OH-1004 ID | LXL04_013670 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 91.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 92.450Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G479730 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:122389882-122394152 (+) | |||||||||
| Description | Similar to OOP: Organellar oligopeptidase A, chloroplastic/mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006260 DNA replication Biological Process GO:0006465 signal peptide processing Biological Process GO:0006508 proteolysis Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0048046 apoplast Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT5G10540 ath:AT5G65620 ecj:JW3465 eco:b3498 ecoc:C3026_18945 hin:HI_0214 stm:STM3594 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13398Peptidase_M50B14-28 aaPF28544Helical_needle118-189 aaPF19310TOP_N124-246 aaPF26081DUF8031128-144 aaPF26081DUF8031239-269 aaPF28544Helical_needle250-272 aaPF01432Peptidase_M3326-786 aaPF28544Helical_needle387-401 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G479730 | PF13398 | Peptidase_M50B | 14 | 28 | 0.25 | 11.7 |
| TkA02G479730 | PF28544 | Helical_needle | 118 | 189 | 0.63 | 10.6 |
| TkA02G479730 | PF19310 | TOP_N | 124 | 246 | 1.8e-55 | 186.7 |
| TkA02G479730 | PF26081 | DUF8031 | 128 | 144 | 0.086 | 13.4 |
| TkA02G479730 | PF26081 | DUF8031 | 239 | 269 | 0.086 | 13.4 |
| TkA02G479730 | PF28544 | Helical_needle | 250 | 272 | 0.63 | 10.6 |
| TkA02G479730 | PF01432 | Peptidase_M3 | 326 | 786 | 4.3e-136 | 455.6 |
| TkA02G479730 | PF28544 | Helical_needle | 387 | 401 | 0.63 | 10.6 |
| TkA02G479730 | PF19310 | TOP_N | 393 | 413 | 1.8e-55 | 186.7 |
| TkA02G479730 | PF13398 | Peptidase_M50B | 560 | 585 | 0.25 | 11.7 |
| TkA02G479730 | PF19527 | DUF6055 | 567 | 617 | 0.097 | 12.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.