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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G474840
Reference: TK1151 Chr: Chr02 Coordinates: 121209400-121210539 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1140 bp · TkA02G474840|TK1151|cDNA

ATGACCATTTCCAAAGCCAAATCGAAACTCAAAACGGAACACGATACCGACAAAGCTCTAAACATTTACTCAACCGTCAAAGCCAATTACTCCGCATCGTCACCCGGATCCGCTAATCATGCTCAGCAGATCACAGTCCGCCGCCTTGCAAAATCTCATCGTTTTTCTGATATAGAAGCCCTCCTCGAGTCTCACAAAAGCGATCCTCGAATCACCGATGAGCACTTTTTATCTTCTCTCATTAAATCATACGGTATCGC...

CDS

Download CDS FASTA

1140 bp · TkA02G474840|TK1151|CDS

ATGACCATTTCCAAAGCCAAATCGAAACTCAAAACGGAACACGATACCGACAAAGCTCTAAACATTTACTCAACCGTCAAAGCCAATTACTCCGCATCGTCACCCGGATCCGCTAATCATGCTCAGCAGATCACAGTCCGCCGCCTTGCAAAATCTCATCGTTTTTCTGATATAGAAGCCCTCCTCGAGTCTCACAAAAGCGATCCTCGAATCACCGATGAGCACTTTTTATCTTCTCTCATTAAATCATACGGTATCGC...

Protein

Download Protein FASTA

379 aa · TkA02G474840|TK1151|PROTEIN

MTISKAKSKLKTEHDTDKALNIYSTVKANYSASSPGSANHAQQITVRRLAKSHRFSDIEALLESHKSDPRITDEHFLSSLIKSYGIAGMFEQALNTYNQMETLKTPRSALSFNALLTACLKSKNYDRAPQLFDEMPAKYRFRPDEYSYGMLVKSFCDAGKPELAIDKLKEMDKKGMPISGITYTSIIHSLYKKGNPTEAEKIWDEMVNRGCLIDVAANNVRLMNAVDGDPENIKSMIEEMSNAALKPDTISYNYLMTCYC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G474840
TK1151 IDTkA02G474840
OH-1004 IDLXL04_013731
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 97.098 / OH-1004 89.538
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G474840
LocationChr02:121209400-121210539 (-)
DescriptionSimilar to At4g36680: Pentatricopeptide repeat-containing protein At4g36680, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g36680 Small ribosomal subunit protein mL103 (rPPR7). No verified direct reference in this release
At2g18520 Pentatricopeptide repeat-containing protein At2g18520, mitochondrial. No verified direct reference in this release
At3g13160 Small ribosomal subunit protein mS79 (rPPR3b). No verified direct reference in this release
At5g25630 Pentatricopeptide repeat-containing protein At5g25630. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013731 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005840 ribosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G55890
ath:AT1G61870
ath:AT2G18520
ath:AT3G13160
ath:AT4G36680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.879
Rank 1 · TkA02G474840 · TK1151
Plastid0.064
Rank 2 · TkA02G474840 · TK1151
Nucleus0.052
Rank 3 · TkA02G474840 · TK1151
Cytoplasm0.039
Rank 4 · TkA02G474840 · TK1151
Cell membrane0.013
Rank 5 · TkA02G474840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long13-32 aa
PF14559TPR_1913-26 aa
PF28771RMD9_mid13-37 aa
PF13424TPR_1214-31 aa
PF13174TPR_615-32 aa
PF23231HAT_Syf1_CNRKL1_C15-56 aa
PF25569TPR_ZFYVE2645-74 aa
PF29070MSC6_N50-165 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G474840PF17177PPR_long13322.3e-1454.0
TkA02G474840PF14559TPR_1913260.0002622.0
TkA02G474840PF28771RMD9_mid13370.03414.6
TkA02G474840PF13424TPR_1214310.01815.9
TkA02G474840PF13174TPR_615320.0006320.9
TkA02G474840PF23231HAT_Syf1_CNRKL1_C15560.05612.9
TkA02G474840PF25569TPR_ZFYVE2645740.08513.8
TkA02G474840PF29070MSC6_N501653.9e-1763.1
TkA02G474840PF24760TPR_IF140_C511016.6e-0627.2
TkA02G474840PF12921ATP13651000.0001222.7
TkA02G474840PF05843Suf661340.000519.5
TkA02G474840PF03704BTAD721010.04314.9
TkA02G474840PF23276TPR_24731352.7e-1763.6
TkA02G474840PF01535PPR781013.5e-38127.9
TkA02G474840PF12854PPR_1781011.6e-35121.2
TkA02G474840PF13041PPR_2791012.5e-42143.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M065Arabidopsis thalianasp|Q9M065|PP352_ARATH Small ribosomal subunit protein mL103 (rPPR7)58.000%Swiss-ProtHigh
Q9ZU67Arabidopsis thalianasp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial56.100%Swiss-ProtHigh
Q9LK57Arabidopsis thalianasp|Q9LK57|PP226_ARATH Small ribosomal subunit protein mS79 (rPPR3b)39.400%Swiss-ProtLow
Q8GZ63Arabidopsis thalianasp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g2563023.100%Swiss-ProtLow

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