TkA02G473900 | RubberDandelionOmics

Gene overview

TkA02G473900

Reference: TK1151 Chr: Chr02 Coordinates: 120951821-120953974 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1109 bp · TkA02G473900|TK1151|cDNA

TACTGATCAATCGTTCTTATAACATCCGTCCAAAAACATTAATAACGAGAGTGTCGAGTCAACTCAATGACAAAAAAAACATTCAAGTACAGGAATCCTGGGAAGAAAAATTGAACACGAAACGATCAATTTGTCAGGTTGCTAGATTTCGCCTGAGATTTATGCCATCCTGGCGATTCAATCTTGAAAACGAAGTAAATTTGAACACCGCCGTTGGTTTCAATCTTGGTGGCCCCGGCTACCGCCGCCCATGGTTATAG...

CDS

Download CDS FASTA

630 bp · TkA02G473900|TK1151|CDS

ATGTCGGAAATCTTGCAGATCTTCCAGCACTCACCACCGCCATACCATCAAATGCCTCCCCACATTCAACGAGGCCTGGTAAACTACGATTCCCAATATACCCGGTCTATAGATTCCGGTTCTCCCTCGCCTGACATCTTCGACGGAGCGGATAATTTTCGGTGTTCCGAGTTTGCCGATAATCCATTTATGAACTTCTCAAGTTCGTCGGTTGATGAATTATCGAAGGTGACCGCCATCATTGGGCATAGTCAGAGCTC...

Protein

Download Protein FASTA

209 aa · TkA02G473900|TK1151|PROTEIN

MSEILQIFQHSPPPYHQMPPHIQRGLVNYDSQYTRSIDSGSPSPDIFDGADNFRCSEFADNPFMNFSSSSVDELSKVTAIIGHSQSSKKRKLEFDNVDIGLHEPHRTKKDTPDGNSKPKPDYIHVRARRGEATDSHSIAERARREKIKKKMQDLQDLVPGCNKIANRAAILDEIIFYVQSLQMEVEFLTMQLNASTTSLSQLLEGQFIS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G473900`
TK1151 ID	TkA02G473900
OH-1004 ID	LXL04_030675
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	65.600
Protein coverage (%)	TK1151 43.062 / OH-1004 34.884 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G473900

Location Chr02:120951821-120953974 (-)

Description Similar to BHLH79: Transcription factor bHLH79

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36540`	Positive regulator of brassinosteroid signaling.	No verified direct reference in this release
`At1g59640`	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.	No verified direct reference in this release
`At5g62610`	Transcription factor bHLH79.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0193800`	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes.	No verified direct reference in this release
`Os03g0802900`	Transcription factor that may regulate jasmonate-regulated genes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030675 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0048446 petal morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G59640

ath:AT3G07340

ath:AT5G62610

dosa:Os03g0802900

dosa:Os07g0193800

osa:4334471

osa:4342637

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.917

Rank 1 · TkA02G473900 · TK1151

Cytoplasm0.267

Rank 2 · TkA02G473900 · TK1151

Mitochondrion0.019

Rank 3 · TkA02G473900 · TK1151

Cell membrane0.016

Rank 4 · TkA02G473900 · TK1151

Lysosome / Vacuole0.009

Rank 5 · TkA02G473900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23183bHLH_NPAS4114-126 aa

PF23177bHLH_IRO3134-191 aa

PF00010HLH135-182 aa

PF23183bHLH_NPAS4139-169 aa

PF23173bHLH_SAC51140-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G473900	`PF23183`	bHLH_NPAS4	114	126	0.064	13.9
TkA02G473900	`PF23177`	bHLH_IRO3	134	191	0.0078	17.3
TkA02G473900	`PF00010`	HLH	135	182	2e-08	34.6
TkA02G473900	`PF23183`	bHLH_NPAS4	139	169	0.064	13.9
TkA02G473900	`PF23173`	bHLH_SAC51	140	185	1.1e-06	29.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93VJ4`	Arabidopsis thaliana	sp\|Q93VJ4\|BEE2_ARATH Transcription factor BEE 2	45.000%	Swiss-Prot	Medium
`Q0JXE7`	Arabidopsis thaliana	sp\|Q0JXE7\|BPE_ARATH Transcription factor BPE	51.100%	Swiss-Prot	Medium
`Q9LV17`	Arabidopsis thaliana	sp\|Q9LV17\|BH079_ARATH Transcription factor bHLH79	64.400%	Swiss-Prot	Low
`Q69WS3`	Oryza sativa subsp. japonica	sp\|Q69WS3\|BH094_ORYSJ Transcription factor BHLH094	72.700%	Swiss-Prot	Low
`Q84T08`	Oryza sativa subsp. japonica	sp\|Q84T08\|BH089_ORYSJ Transcription factor BHLH089	63.600%	Swiss-Prot	Low

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