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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G471560
Reference: TK1151 Chr: Chr02 Coordinates: 120313784-120317162 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2539 bp · TkA02G471560|TK1151|cDNA

GGGGATTCGAGATCGGTAAGGTGGGATTACGGGAAGAGAACGGGTTCAAGCAAAGAGGGAGAAAGGGAGAAGAAGCAAAGAACTGTGACTTCGTGATCCCGAGCAAGCGGCAAGGTGAAGAAGAAAGAAGGCGTTGGCGGGTTCGGCAAGACTGAGCTGAGCAAGATGGCGACATCGCTAGACCTCGGGTTCAGAGAGGTCGTCGGCTATTTTGGGTTCATAAATGGCGACAACGCACGCCCTTAGGGCAAAATAAAAGC...

CDS

Download CDS FASTA

2094 bp · TkA02G471560|TK1151|CDS

ATGTTATTATGTATTTGTAAAATATTTTACTCTCACTTACAGGAACAGCAGATATCAAATATGGGCACACAGAAAACACCAATTTTTTCAAATGTCCCAGTTTCATGTATGATGGTTTCGATCTCTCGTACTCCATCGACCACCAAAATTCTCCCGAATCTTAGCATAATCACCAAACCAGAACCTCCTCGTTATAATCATCAAAGACCTCAAGACACCATTGCCCCTTCCATCTCTTCCTCTCACCTCCATCAAACAAA...

Protein

Download Protein FASTA

697 aa · TkA02G471560|TK1151|PROTEIN

MLLCICKIFYSHLQEQQISNMGTQKTPIFSNVPVSCMMVSISRTPSTTKILPNLSIITKPEPPRYNHQRPQDTIAPSISSSHLHQTKLLESQVVSLLDSSNNLSQAKQIHAHLIRKGLDQCCFVITKLIRVLNAKFDVPMDPYPRRAFHQVKRPNPFLFTALIRGYTVQGPFMESVTLYNLMRRQGIGPVSFTFTALLKACSGAGGVSLGMQIHGQAISLGGFSSDLYVGNTLISMYVRCELLDDARKVFDEMTERDEIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G471560
TK1151 IDTkA02G471560
OH-1004 IDLXL04_013788
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 94.835 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G471560
LocationChr02:120313784-120317162 (+)
DescriptionSimilar to PCMP-H17: Pentatricopeptide repeat-containing protein At5g44230
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44230 Pentatricopeptide repeat-containing protein At5g44230. No verified direct reference in this release
At5g06540 Pentatricopeptide repeat-containing protein At5g06540. No verified direct reference in this release
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013788 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G29760
ath:AT3G49142
ath:AT5G06540
ath:AT5G44230
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.548
Rank 1 · TkA02G471560 · TK1151
Plastid0.321
Rank 2 · TkA02G471560 · TK1151
Nucleus0.058
Rank 3 · TkA02G471560 · TK1151
Cytoplasm0.034
Rank 4 · TkA02G471560 · TK1151
Cell membrane0.007
Rank 5 · TkA02G471560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N70-109 aa
PF17177PPR_long86-114 aa
PF14559TPR_1998-113 aa
PF22330Rib_mS39_PPR147-166 aa
PF13041PPR_2154-202 aa
PF12854PPR_1154-166 aa
PF17177PPR_long154-212 aa
PF13812PPR_3155-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G471560PF29070MSC6_N701091.4e-1041.6
TkA02G471560PF17177PPR_long861145e-0936.6
TkA02G471560PF14559TPR_19981130.003718.3
TkA02G471560PF22330Rib_mS39_PPR1471660.02315.2
TkA02G471560PF13041PPR_21542026e-50167.9
TkA02G471560PF12854PPR_11541669.2e-30102.8
TkA02G471560PF17177PPR_long1542125e-0936.6
TkA02G471560PF13812PPR_31552035.5e-2071.9
TkA02G471560PF01535PPR1581873.9e-50165.4
TkA02G471560PF23276TPR_241591991.2e-0938.9
TkA02G471560PF29070MSC6_N1602021.4e-1041.6
TkA02G471560PF12854PPR_11862009.2e-30102.8
TkA02G471560PF01535PPR1922153.9e-50165.4
TkA02G471560PF17177PPR_long1983405e-0936.6
TkA02G471560PF13812PPR_32222555.5e-2071.9
TkA02G471560PF24603TPR_302282960.01416.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFG8Arabidopsis thalianasp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g4423058.000%Swiss-ProtHigh
Q9FG16Arabidopsis thalianasp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g0654045.300%Swiss-ProtMedium
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652044.500%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914235.400%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic36.600%Swiss-ProtMedium

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