Gene Card
Gene overview
cDNA / CDS / Protein Sequences
12187 bp · TkA02G469820|TK1151|cDNA
ATGAAGTGCGTGCGAAACCCGAAACTTGGTTCGTTCTATAAATTTCGCGAGTGCACATGAAGTGCGTGCGAGGAGGGCGAGGCCTGGTTGAATGATCACGTAAAATCCTCGGTTTCATTCAACCCCCAGCTCTTTCAGATCAGTAGAATCAAGTTTCTCATTCTCAAATTCACCCAGCAAAACCTAATTTTGTACAGTTATAATCTTACTAGCTAGTAGAGATCAAAAGTTCGCAGAAAGTTAGCCCTAGAAATCAGCCA...
1308 bp · TkA02G469820|TK1151|CDS
ATGTACATCATAAGATCGGATGGTGGGCAGCCCTTAAGAGAAGAGCTTGCAAAGTCACCAGAAAAGATACTGTCAAGTGCATTCCCTGAGTTCATTCCTAAAGCTGAGGCATCTGAAATAGGGGGTGATGACAACACCACTCAACCTCAAGCTGCTGCCCCAAGTGTACTGCCAGATGCTTACTTTCAGGGTCTTGCTCTTATAAAAACATTGGTGAAACTCATGCCTGGATGGTTACAAAGTAACCGTATTGTTTTTGA...
Protein
Download Protein FASTA435 aa · TkA02G469820|TK1151|PROTEIN
MYIIRSDGGQPLREELAKSPEKILSSAFPEFIPKAEASEIGGDDNTTQPQAAAPSVLPDAYFQGLALIKTLVKLMPGWLQSNRIVFDSLVLLWKSPARISRLQNKQEQSLVQVKESKWLVKCFLNYLRHDKAEVNVLFEILSIFLYHTRIDFTFLKEFYIIEVAEGYEPSMKKTLLLHFLNIFQSKQMGHDHLVVIMQMLILPMLAHAFQNEQTWEVIDTAIIKTIVDKLLDPPEEVSADYDEPLRIELLQLATLLLKHL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G469820 |
|---|---|
| TK1151 ID | TkA02G469820 |
| OH-1004 ID | LXL04_013821 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 96.092 / OH-1004 10.802Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G469820 |
|---|---|
| Location | Chr02:119859818-119874287 (-) |
| Description | Similar to Nipped-A: Transcription-associated protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006282 regulation of DNA repair Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0051726 regulation of cell cycle Biological Process GO:0140861 DNA repair-dependent chromatin remodeling Biological Process GO:1905168 positive regulation of double-strand break repair via homologous recombination Biological Process GO:2000779 regulation of double-strand break repair Biological Process GO:0000123 histone acetyltransferase complex Cellular Component GO:0000124 SAGA complex Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG33554 hsa:8295 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF20206Tra1_ring2-415 aaPF09431SPIN90_LRD196-270 aaPF09431SPIN90_LRD306-336 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G469820 | PF20206 | Tra1_ring | 2 | 415 | 2.4e-130 | 437.0 |
| TkA02G469820 | PF09431 | SPIN90_LRD | 196 | 270 | 0.074 | 13.9 |
| TkA02G469820 | PF09431 | SPIN90_LRD | 306 | 336 | 0.074 | 13.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.