Gene Card
Gene overview
cDNA / CDS / Protein Sequences
11640 bp · LXL04_013821|LXL04_013821|OH1004|cDNA
ATGAGTCCTATTCAGAATTTCGAGCAGCATTCTCGCCATCTCATGGAACCCGATATTTCTATTCAAACCAGGCTTCAAATGGCAATGGAGGTACGGGATAGCTTAGAGATAACACACACAGGAGAGTACTTAAATTTCTTGAAGTGCTACTTCCGCCCTTTTTCTGGAATCCTCTATCAGATAACAAAACCACAGTTCACTGACAACCCTGAGCATAAACTGAGAAACATCATCATTGAAATCCTCAACCGCCTTCCTCA...
11640 bp · LXL04_013821|LXL04_013821|OH1004|CDS
ATGAGTCCTATTCAGAATTTCGAGCAGCATTCTCGCCATCTCATGGAACCCGATATTTCTATTCAAACCAGGCTTCAAATGGCAATGGAGGTACGGGATAGCTTAGAGATAACACACACAGGAGAGTACTTAAATTTCTTGAAGTGCTACTTCCGCCCTTTTTCTGGAATCCTCTATCAGATAACAAAACCACAGTTCACTGACAACCCTGAGCATAAACTGAGAAACATCATCATTGAAATCCTCAACCGCCTTCCTCA...
Protein
Download Protein FASTA3879 aa · LXL04_013821|LXL04_013821|OH1004|PROTEIN
MSPIQNFEQHSRHLMEPDISIQTRLQMAMEVRDSLEITHTGEYLNFLKCYFRPFSGILYQITKPQFTDNPEHKLRNIIIEILNRLPHSEVLRPFVQELLKVAMHVLTTDNEENGLICIRIIFDLLRNFRPTQETEVQPFLDFVCKIYQNFRLTVSHFFESGALVAPAMPPPSSMSALPSLGNEDVKPMEISDQVGSSTATSTGAGQLNPSTRSFKIVTESPLVVMFLFQLYNRLVQTNIPQLLPLMVAAISVPGPDKVPP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013821 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013821 |
|---|---|
| Location | Chr03:36443190-36457132 (+) |
| Description | Similar to Nipped-A: Transcription-associated protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006282 regulation of DNA repair Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0051726 regulation of cell cycle Biological Process GO:0140861 DNA repair-dependent chromatin remodeling Biological Process GO:1905168 positive regulation of double-strand break repair via homologous recombination Biological Process GO:2000779 regulation of double-strand break repair Biological Process GO:0000123 histone acetyltransferase complex Cellular Component GO:0000124 SAGA complex Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG33554 hsa:8295 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF20175.4Tra1_central266-837 aaPF20206.5Tra1_ring848-2666 aaPF02259.30FAT2811-3149 aaPF00454.34PI3_PI4_kinase3545-3791 aaPF02260.26FATC3848-3879 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_013821 | PF20175.4 | Tra1_central | 266 | 837 | 3.4e-155 | 518.8 |
| LXL04_013821 | PF20206.5 | Tra1_ring | 848 | 2666 | 1461.9 | |
| LXL04_013821 | PF02259.30 | FAT | 2811 | 3149 | 1.6e-41 | 143.4 |
| LXL04_013821 | PF00454.34 | PI3_PI4_kinase | 3545 | 3791 | 2e-25 | 90.9 |
| LXL04_013821 | PF02260.26 | FATC | 3848 | 3879 | 4.1e-07 | 30.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.