TkA02G467570 | RubberDandelionOmics

Gene overview

TkA02G467570

Reference: TK1151 Chr: Chr02 Coordinates: 119254773-119263132 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · TkA02G467570|TK1151|cDNA

ATGGGACCTGTATTCATATTTGGGGATTCAACGGTGGATGTTGGCACAAACAACCACCTCAAAAATTGCACTGCAAAAGCCAATCATCCATATTATGGGATCGATTATACAAGGTCCAAACCAACCGGAAGGTTCAGCAATGGTTTAAACTCAGCCGACACCATTGTCACACTTTTGGGTGGCTATAAACGTAGTCCGCCTCCATTTCTTGCACTCCTTAAAAATTGTTCCAACTTCACGGCAAAATTACTTCACGGGGT...

CDS

Download CDS FASTA

1017 bp · TkA02G467570|TK1151|CDS

ATGGGACCTGTATTCATATTTGGGGATTCAACGGTGGATGTTGGCACAAACAACCACCTCAAAAATTGCACTGCAAAAGCCAATCATCCATATTATGGGATCGATTATACAAGGTCCAAACCAACCGGAAGGTTCAGCAATGGTTTAAACTCAGCCGACACCATTGTCACACTTTTGGGTGGCTATAAACGTAGTCCGCCTCCATTTCTTGCACTCCTTAAAAATTGTTCCAACTTCACGGCAAAATTACTTCACGGGGT...

Protein

Download Protein FASTA

338 aa · TkA02G467570|TK1151|PROTEIN

MGPVFIFGDSTVDVGTNNHLKNCTAKANHPYYGIDYTRSKPTGRFSNGLNSADTIVTLLGGYKRSPPPFLALLKNCSNFTAKLLHGVNFASGGSGLYKETGKDTFGTVVSLEEQIQQFAMVQGNITALLGDSKGQLLLQDSIYIISIGSNDIMSYVFTHHVTPELFIANLTTTYAIHLKNLYSLGARKFGLISVPPIGCCPIARSYSPVVSPGGTCAKEPNDLASAFFTPFESLLKNLSSTLEGFKYSLGNSYNMTMNII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G467570`
TK1151 ID	TkA02G467570
OH-1004 ID	LXL04_013854
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	91.700
Protein coverage (%)	TK1151 99.704 / OH-1004 91.233 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G467570

Location Chr02:119254773-119263132 (+)

Description Similar to At4g16230: GDSL esterase/lipase At4g16230

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At5g37690`	GDSL esterase/lipase At5g37690.	No verified direct reference in this release
`At5g03820`	GDSL esterase/lipase At5g03820.	No verified direct reference in this release
`At5g55050`	GDSL esterase/lipase At5g55050.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G74460

ath:AT2G23540

ath:AT3G50400

ath:AT4G16230

ath:AT5G37690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.395

Rank 1 · TkA02G467570 · TK1151

Cytoplasm0.162

Rank 2 · TkA02G467570 · TK1151

Lysosome / Vacuole0.155

Rank 3 · TkA02G467570 · TK1151

Endoplasmic reticulum0.109

Rank 4 · TkA02G467570 · TK1151

Cell membrane0.106

Rank 5 · TkA02G467570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL4-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G467570	`PF00657`	Lipase_GDSL	4	318	7.6e-27	95.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23470`	Arabidopsis thaliana	sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230	34.600%	Swiss-Prot	Medium
`Q9FHQ1`	Arabidopsis thaliana	sp\|Q9FHQ1\|GDL80_ARATH GDSL esterase/lipase At5g37690	36.900%	Swiss-Prot	Medium
`Q9LZC5`	Arabidopsis thaliana	sp\|Q9LZC5\|GDL73_ARATH GDSL esterase/lipase At5g03820	34.000%	Swiss-Prot	Medium
`Q9FIA1`	Arabidopsis thaliana	sp\|Q9FIA1\|GDL87_ARATH GDSL esterase/lipase At5g55050	34.100%	Swiss-Prot	Medium
`O80470`	Arabidopsis thaliana	sp\|O80470\|GDL38_ARATH GDSL esterase/lipase At2g23540	35.400%	Swiss-Prot	Medium

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