LXL04_013854 | RubberDandelionOmics

Gene overview

LXL04_013854

Reference: OH-1004 Chr: Chr03 Coordinates: 37000149-37004371 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1098 bp · LXL04_013854|LXL04_013854|OH1004|cDNA

ATGGCCACCCAAAAACTCATGCTGCTCACAACATGCAGCATACTCCTTTTCAGTCTTTCAACCATAGCCACAGAAAAGGCAGCAAGTAAACCCATGGGACCTGTATTCATATTTGGGGATTCAACGGTGGATGTTGGCACAAACAACCACCTCAAAAATTGCACTGCAAAAGCCAATCATCCATATTATGGGATCGATTATACAAGGTCCAAACCAACCGGAAGGTTCAGCAATGGTTTAAACTCAGCCGACACCATTGT...

CDS

Download CDS FASTA

1098 bp · LXL04_013854|LXL04_013854|OH1004|CDS

ATGGCCACCCAAAAACTCATGCTGCTCACAACATGCAGCATACTCCTTTTCAGTCTTTCAACCATAGCCACAGAAAAGGCAGCAAGTAAACCCATGGGACCTGTATTCATATTTGGGGATTCAACGGTGGATGTTGGCACAAACAACCACCTCAAAAATTGCACTGCAAAAGCCAATCATCCATATTATGGGATCGATTATACAAGGTCCAAACCAACCGGAAGGTTCAGCAATGGTTTAAACTCAGCCGACACCATTGT...

Protein

Download Protein FASTA

365 aa · LXL04_013854|LXL04_013854|OH1004|PROTEIN

MATQKLMLLTTCSILLFSLSTIATEKAASKPMGPVFIFGDSTVDVGTNNHLKNCTAKANHPYYGIDYTRSKPTGRFSNGLNSADTIVTLLGGYKRSPPPFLALLKNCSNFTAKLLHGVNFASGGSGLYKETGKDTFGTVVSLEEQIQQFAMVQGNITALLGDSKGQLLLQDSIYIISIGSNDIMSYVFTHHVTPELFIANLTTTYAIHLKNLYSLGARKFGLISVPPIGCCPIARSYSPVGDCAKEPNDLASAFYTPFES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013854`
TK1151 ID	TkA02G467570
OH-1004 ID	LXL04_013854
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	91.700
Protein coverage (%)	TK1151 99.704 / OH-1004 91.233 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013854

Location Chr03:37000149-37004371 (-)

Description Similar to At4g16230: GDSL esterase/lipase At4g16230

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At5g37690`	GDSL esterase/lipase At5g37690.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At1g74460`	GDSL esterase/lipase At1g74460.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013854 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G74460

ath:AT2G23540

ath:AT3G50400

ath:AT4G16230

ath:AT5G37690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.395

Rank 1 · LXL04_013854 · OH-1004

Cell membrane0.173

Rank 2 · LXL04_013854 · OH-1004

Lysosome / Vacuole0.138

Rank 3 · LXL04_013854 · OH-1004

Endoplasmic reticulum0.134

Rank 4 · LXL04_013854 · OH-1004

Cytoplasm0.116

Rank 5 · LXL04_013854 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL35-345 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013854	`PF00657.29`	Lipase_GDSL	35	345	5.4e-28	99.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23470`	Arabidopsis thaliana	GDSL esterase/lipase At4g16230	33.604%	Swiss-Prot	moderate database homology
`Q9FHQ1`	Arabidopsis thaliana	GDSL esterase/lipase At5g37690	36.578%	Swiss-Prot	moderate database homology
`O80470`	Arabidopsis thaliana	GDSL esterase/lipase At2g23540	35.904%	Swiss-Prot	moderate database homology
`Q9CA68`	Arabidopsis thaliana	GDSL esterase/lipase At1g74460	35.423%	Swiss-Prot	moderate database homology
`Q9M2R9`	Arabidopsis thaliana	GDSL esterase/lipase At3g50400	34.565%	Swiss-Prot	moderate database homology

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