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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G441270
Reference: TK1151 Chr: Chr02 Coordinates: 112173655-112174698 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

465 bp · TkA02G441270|TK1151|cDNA

ATGCAGATATTCGTCAAAACCCTAACTGGGAAAACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGATCAACAGAGATTGATTTTTGCTGGAAAGCAATTAGAAGATGGAAGAACGCTTGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTCTAAGATTGAGAGGAGGAACCATGATCAAGGTCAAAACTCTTACAGGAAA...

CDS

Download CDS FASTA

465 bp · TkA02G441270|TK1151|CDS

ATGCAGATATTCGTCAAAACCCTAACTGGGAAAACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGATCAACAGAGATTGATTTTTGCTGGAAAGCAATTAGAAGATGGAAGAACGCTTGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTCTAAGATTGAGAGGAGGAACCATGATCAAGGTCAAAACTCTTACAGGAAA...

Protein

Download Protein FASTA

154 aa · TkA02G441270|TK1151|PROTEIN

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G441270
TK1151 IDTkA02G441270
OH-1004 IDLXL04_014290
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G441270
LocationChr02:112173655-112174698 (-)
DescriptionSimilar to RUB2: Ubiquitin-NEDD8-like protein RUB2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31340 Ubiquitin exists either covalently attached to another protein, or free (unanchored).
The Arabidopsis cullin AtCUL1 is modified by the ubiquitin-related protein RUB1.1999 · DOI: 10.1073/pnas.96.26.15342
The ubiquitin-related protein RUB1 and auxin response in Arabidopsis.1998 · DOI: 10.1126/science.280.5370.1760
At2g35635 Ubiquitin exists either covalently attached to another protein, or free (unanchored). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0420800 Ubiquitin exists either covalently attached to another protein, or free (unanchored). No verified direct reference in this release
Os06g0650100 Ubiquitin exists either covalently attached to another protein, or free (unanchored). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014290 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009693 ethylene biosynthetic process Biological Process
GO:0009733 response to auxin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0019941 modification-dependent protein catabolic process Biological Process
GO:0045116 protein neddylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0022626 cytosolic ribosome Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0003735 structural constituent of ribosome Molecular Function
GO:0031386 protein tag activity Molecular Function
KEGG gene cross-reference
ath:AT1G31340
dosa:Os09g0420800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.698
Rank 1 · TkA02G441270 · TK1151
Nucleus0.331
Rank 2 · TkA02G441270 · TK1151
Cell membrane0.123
Rank 3 · TkA02G441270 · TK1151
Extracellular0.119
Rank 4 · TkA02G441270 · TK1151
Mitochondrion0.118
Rank 5 · TkA02G441270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11976Rad60-SLD1-71 aa
PF18036Ubiquitin_41-33 aa
PF00240ubiquitin3-74 aa
PF21989RA_24-38 aa
PF23326UBL_UBAC18-72 aa
PF29299UBL_IKK8-44 aa
PF12977DUF38618-49 aa
PF20170Plexin_RBD9-32 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G441270PF11976Rad60-SLD1718.3e-35119.1
TkA02G441270PF18036Ubiquitin_41339.7e-0523.0
TkA02G441270PF00240ubiquitin3741.5e-62208.0
TkA02G441270PF21989RA_24380.06913.9
TkA02G441270PF23326UBL_UBAC18720.01815.6
TkA02G441270PF29299UBL_IKK8440.03515.1
TkA02G441270PF12977DUF38618490.07514.0
TkA02G441270PF20170Plexin_RBD9320.0009220.0
TkA02G441270PF02518HATPase_c9500.0514.8
TkA02G441270PF13881Rad60-SLD_210728.5e-0729.8
TkA02G441270PF10790DUF260410728.5e-0626.8
TkA02G441270PF21403OTU1_UBXL10390.0001722.8
TkA02G441270PF27055BilA_UBL_210400.005218.0
TkA02G441270PF14274BT_3044-like_C10930.05314.5
TkA02G441270PF14560Ubiquitin_211694e-1143.9
TkA02G441270PF20147Crinkler11460.01217.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SHE7Arabidopsis thalianasp|Q9SHE7|RUB1_ARATH Ubiquitin-NEDD8-like protein RUB1100.000%Swiss-ProtHigh
Q8RUC6Arabidopsis thalianasp|Q8RUC6|RUB2_ARATH Ubiquitin-NEDD8-like protein RUB298.700%Swiss-ProtHigh
P0C030Oryza sativa subsp. japonicasp|P0C030|RUB1_ORYSJ Ubiquitin-NEDD8-like protein RUB1100.000%Swiss-ProtHigh
P0C031Oryza sativa subsp. japonicasp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2100.000%Swiss-ProtHigh

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